Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00801
(721 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S... 81 2e-16
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 38 0.001
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 33 0.041
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha... 30 0.38
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa... 30 0.38
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar... 30 0.38
SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces p... 29 0.51
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc... 29 0.88
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 29 0.88
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 28 1.2
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c... 28 1.5
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 28 1.5
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.0
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 27 2.7
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 27 2.7
SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|... 26 4.7
SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomy... 26 6.2
SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p... 26 6.2
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm... 25 8.2
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 25 8.2
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 25 8.2
SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc... 25 8.2
>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
Sop2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 377
Score = 80.6 bits (190), Expect = 2e-16
Identities = 35/54 (64%), Positives = 44/54 (81%)
Frame = +2
Query: 509 AYVWTQGDDGKWATTLVLLRINRAATCVKWSPMENKFAVGSGARLISICYLRRK 670
AYV+ + DG W TLVLLR+NRAAT V+WSP E+KFAVGSGAR+IS+CY ++
Sbjct: 79 AYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQE 132
Score = 69.3 bits (162), Expect = 5e-13
Identities = 27/61 (44%), Positives = 39/61 (63%)
Frame = +3
Query: 324 HAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVD 503
HA+N R++ + N+V +Y+++GN WK +HD V +DWAP +NRIVTCS D
Sbjct: 17 HAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQD 76
Query: 504 R 506
R
Sbjct: 77 R 77
Score = 45.2 bits (102), Expect = 1e-05
Identities = 15/21 (71%), Positives = 21/21 (100%)
Frame = +1
Query: 658 FEKENNWWVSKHIKKPIRSTV 720
FE+EN+WWVSKH+K+P+RST+
Sbjct: 129 FEQENDWWVSKHLKRPLRSTI 149
Score = 36.7 bits (81), Expect = 0.003
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = +3
Query: 291 TFGDSCAPITCHAWNKDRSQIAFSPNNNEVHIYKKEGN-DWKQTNNLVEHDLRVMGIDWA 467
TF D +TC W ++I + ++Y+K + WKQT L+ + + W+
Sbjct: 50 TFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWS 109
Query: 468 PNTNRIVTCSVDRKLT 515
PN ++ S R ++
Sbjct: 110 PNEDKFAVGSGARVIS 125
Score = 29.5 bits (63), Expect = 0.51
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = +3
Query: 330 WNKDRSQIAFSPNNNEVHI-YKKEGNDWKQTNNLVEHDLR--VMGIDWAPNTNRIVTCSV 500
W+ + + A + + Y ++ NDW + +L + LR ++ +DW PN +
Sbjct: 108 WSPNEDKFAVGSGARVISVCYFEQENDWWVSKHL-KRPLRSTILSLDWHPNNVLLAAGCA 166
Query: 501 DRK 509
DRK
Sbjct: 167 DRK 169
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 38.3 bits (85), Expect = 0.001
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +3
Query: 327 AWNK-DRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVD 503
AW +R +A + ++ V I +K +DW+ T L H+ V I W+ N N + TCS D
Sbjct: 340 AWRPIERPVLAVASFDSVVSINEKIDDDWECTAALEGHENEVKCIAWSCNGNYLATCSRD 399
Query: 504 RKL 512
+ +
Sbjct: 400 KSV 402
Score = 32.3 bits (70), Expect = 0.072
Identities = 13/58 (22%), Positives = 26/58 (44%)
Frame = +3
Query: 330 WNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVD 503
W+ + +N + ++ +G+DW T L H V + ++PN N + + D
Sbjct: 431 WHPTEDLLVSGSYDNSICFWRDDGDDWALTCQLQGHTNTVWALAFSPNGNTLASADND 488
Score = 27.9 bits (59), Expect = 1.5
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +3
Query: 315 ITCHAWNKDRSQIAFSPNNNEVHIYKK-EGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVT 491
+ C AW+ + + +A + V I++ E +++ L EH V + W P + +V+
Sbjct: 381 VKCIAWSCNGNYLATCSRDKSVWIWEATEDDEFDCLAVLQEHTQDVKVVTWHPTEDLLVS 440
Query: 492 CSVDRKL 512
S D +
Sbjct: 441 GSYDNSI 447
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 33.1 bits (72), Expect = 0.041
Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
Frame = +3
Query: 291 TFGDSCAPITCHAWNKDRSQIAFSPNNNEVHIYKKEG----------NDWKQTNNLVEHD 440
T ++ + + C A++ D S A ++ +H+Y N+ Q ++L+ H
Sbjct: 344 TMHNTLSAVNCAAFSDDASMFALGCADSSIHLYSSTNNGPQPLVGSQNEPLQKSSLIGHT 403
Query: 441 LRVMGIDWAPNTNRIVTCSVD 503
V G+ +P I++CS D
Sbjct: 404 RPVFGVSISPQKEFILSCSED 424
>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 535
Score = 29.9 bits (64), Expect = 0.38
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +3
Query: 330 WNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAP 470
WN D SQ A N+N V ++K G+D +Q + + + V + + P
Sbjct: 330 WNHDGSQFASGGNDNRVCLFK--GSDLRQPLYVWQQNAAVKALSFCP 374
>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 29.9 bits (64), Expect = 0.38
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = +3
Query: 330 WNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTC---SV 500
W++ Q+A N+N + ++ + + + EH V I W+P+ I+ ++
Sbjct: 257 WDRSLGQLASGGNDNNLFVWDYRSS--RPLHKFEEHTAAVKAIGWSPHQRGILASGGGTI 314
Query: 501 DRKLT 515
DR LT
Sbjct: 315 DRCLT 319
>SPAC9G1.05 |||actin cortical patch component Aip1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 595
Score = 29.9 bits (64), Expect = 0.38
Identities = 16/72 (22%), Positives = 28/72 (38%)
Frame = +3
Query: 273 KMAQTLTFGDSCAPITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVM 452
K + + AP T ++ +A N V I+ G D N + R+
Sbjct: 47 KQENCFQYNEHTAPTTVARFSPSGYYVASGDNQGNVRIWDCAGEDKILKNQVTAISGRIT 106
Query: 453 GIDWAPNTNRIV 488
+DW ++ RI+
Sbjct: 107 DLDWDGDSQRII 118
>SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 352
Score = 29.5 bits (63), Expect = 0.51
Identities = 14/60 (23%), Positives = 31/60 (51%)
Frame = +3
Query: 327 AWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDR 506
A++ +A S +++V IY+ + L EH V+ ++W+ + ++ + SVD+
Sbjct: 37 AFSPQAEYLAASSWDSKVRIYEVQATGQSIGKALYEHQGPVLSVNWSRDGTKVASGSVDK 96
>SPAC12B10.03 |||WD repeat protein, human WDR20
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 28.7 bits (61), Expect = 0.88
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 584 TCVKWSPMENKFAVGSGARLISI-CYLRRKIIGGC 685
TCV WSP A+G L+SI + RK++ C
Sbjct: 368 TCVTWSPDGKFIAIGGKDDLVSIYSFPLRKLVARC 402
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 28.7 bits (61), Expect = 0.88
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +3
Query: 327 AWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAP-NTNRIVT 491
AW D Q+A N+N V I+ + K T H+ V + W P +N + T
Sbjct: 311 AWRSDGLQLASGGNDNVVQIWDARSSIPKFTK--TNHNAAVKAVAWCPWQSNLLAT 364
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 28.3 bits (60), Expect = 1.2
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +3
Query: 327 AWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNL 428
+W+ + +A S +N+V+++K+ N W+ N L
Sbjct: 262 SWSLSGNILAVSCGDNKVYLFKESQNKWQLLNEL 295
Score = 27.1 bits (57), Expect = 2.7
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = +2
Query: 512 YVWTQGDDGKW-ATTLVLLRINRAATCVKWSPMENKFAVGSG 634
++WT+ DG W T L + A V WS N AV G
Sbjct: 234 FIWTKEGDGPWQKTPLTEEKFPDIAWRVSWSLSGNILAVSCG 275
Score = 26.6 bits (56), Expect = 3.6
Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +3
Query: 351 IAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNT-NRIVTC-SVDRKLT 515
+A + + V ++++ G W + + H V + WAP+ ++ C S D K++
Sbjct: 70 LASASYDGHVIVWRETGGVWSELMDHTAHQASVNAVSWAPHEYGALLACASSDGKVS 126
>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 27.9 bits (59), Expect = 1.5
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Frame = +3
Query: 312 PITCHAW--NKDRSQIAFSPNNNEVHIYKKEGND-WKQTNNLVEHDLRVMGIDWAPN 473
P C W ++ R Q N+ +IYK+ + WK+ L H + I WAP+
Sbjct: 170 PAFCVNWCPSRWREQYIAVGCMNDAYIYKQNSHGKWKKVAELPGHTDLIRDICWAPS 226
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/59 (18%), Positives = 24/59 (40%)
Frame = +3
Query: 330 WNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDR 506
WN + + + ++K++ W Q ++ H V G+ W P ++ D+
Sbjct: 334 WNPNGNCVVCWGRTGGWRLWKQDAGQWLQLPSISGHTKSVKGVAWDPEGKFYLSAGTDQ 392
Score = 26.2 bits (55), Expect = 4.7
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +3
Query: 360 SPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDR 506
+P + + +Y E W Q L H L V I ++P+ I++ DR
Sbjct: 554 TPEHAVIRLY--ETQSWNQQQVLKGHSLTVTTIKFSPDDRYILSAGRDR 600
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.5 bits (58), Expect = 2.0
Identities = 25/99 (25%), Positives = 39/99 (39%)
Frame = -1
Query: 694 YA*TPTNYFPSQIAN*YQSSS*PDSKLVLHGRPFHASRCSVDTQKNKSSCPFPIISLSPD 515
Y TP P N S+S P + + P + C+ T +S P S +
Sbjct: 458 YTSTPVTSTPLTTTNCTTSTSIPYTSTPVTSTPLTTTNCTTSTSVPYTSTPVT----SSN 513
Query: 514 VSLRSTEHVTIRLVLGAQSIPITLRSCSTRLFVCFQSFP 398
++ S+ VT S P+T +C+T V + S P
Sbjct: 514 YTISSSTPVT--------STPVTTTNCTTSTSVLYTSTP 544
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 27.1 bits (57), Expect = 2.7
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Frame = +3
Query: 321 CHAWNKDRSQIAFSPNNNEVH-----IYKKEGNDW-KQTNNLVEHD 440
CH+ + SQ+ SPN +E H + EGN+ + NN+V D
Sbjct: 66 CHSRSDVSSQVQNSPNKDEEHQTADLLASNEGNEKNNEENNVVSSD 111
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 27.1 bits (57), Expect = 2.7
Identities = 15/66 (22%), Positives = 28/66 (42%)
Frame = +3
Query: 315 ITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTC 494
+ C W+ D + V ++ N+ K H++ V + ++PN ++ VT
Sbjct: 126 VRCAEWSTDGRWLISGDGGGMVKYFEPNLNNVKIVQ---AHEMEVRDVAFSPNDSKFVTA 182
Query: 495 SVDRKL 512
S D L
Sbjct: 183 SDDGSL 188
>SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 539
Score = 26.2 bits (55), Expect = 4.7
Identities = 7/25 (28%), Positives = 17/25 (68%)
Frame = -3
Query: 437 VFHKVVCLLPVISFLFVYVNFIIVW 363
+FH V +L ++ + +++N++ VW
Sbjct: 245 IFHPVTYILAIVVPINIFLNYLFVW 269
>SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 336
Score = 25.8 bits (54), Expect = 6.2
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +1
Query: 64 IRKKFTKNKVYG*NCTKKRSF 126
+R+ F+K+KV N TK+R+F
Sbjct: 256 LRRSFSKSKVRNSNSTKRRNF 276
>SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 6.2
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 312 PITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNL 428
PI WN S++A S ++ V ++ + D+K T L
Sbjct: 26 PIRSLGWNLSGSRLASSSSSGSVLVWNSDRLDFKFTTEL 64
>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
intermediate chain Dic1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 544
Score = 25.4 bits (53), Expect = 8.2
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +3
Query: 312 PITCHAWNKDRSQIAFSPNNNEVHIYK 392
P+ AW ++ +A N VHIYK
Sbjct: 510 PLNKIAWQPEKRNLACGGLNGNVHIYK 536
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 25.4 bits (53), Expect = 8.2
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -3
Query: 548 LPISHHLLESRRKLTVNRTRNNTVGVGSPINPHHSKVVFHK 426
LP LL+ + + T R N +G SPI SK+ FH+
Sbjct: 30 LPGPGSLLKKKIRKTEFRIDNGLLGNTSPIINVESKIPFHR 70
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 25.4 bits (53), Expect = 8.2
Identities = 8/41 (19%), Positives = 21/41 (51%)
Frame = +3
Query: 390 KKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRKL 512
+K +W+ L+ HD + + W+ ++ +V+ +D +
Sbjct: 118 EKHTENWRSYRRLLGHDNDIQDLCWSYDSQLVVSVGLDSSI 158
>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 465
Score = 25.4 bits (53), Expect = 8.2
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = +3
Query: 285 TLTFGDSCAPITCHAWNKDRSQIAFSPNNN 374
T+TFG H WN S + PN++
Sbjct: 6 TVTFGRKSNFCWTHFWNTQESYFVYDPNDH 35
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,043,659
Number of Sequences: 5004
Number of extensions: 63458
Number of successful extensions: 191
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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