Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00801
(721 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1227 - 35076047-35076217,35076737-35076797,35077038-350771... 76 3e-14
07_01_1005 + 8509777-8509968,8510059-8510205,8510326-8510544,851... 37 0.014
12_01_0190 - 1404374-1404402,1404491-1404558,1404830-1404967,140... 36 0.032
11_01_0189 - 1493618-1493637,1493728-1493795,1494070-1494207,149... 35 0.057
08_01_0515 - 4490855-4490902,4490992-4491072,4491752-4491823,449... 34 0.13
09_02_0030 + 3115502-3115750,3115835-3116104,3116193-3116633,311... 33 0.30
09_02_0022 + 3065644-3065953,3066048-3067162,3067261-3067437,306... 33 0.30
02_01_0283 + 1903869-1904786 30 1.6
02_02_0528 + 11199799-11200470,11201850-11201951,11202858-112034... 29 2.8
09_06_0292 + 22075647-22075691,22077394-22077507,22077602-220778... 29 3.7
03_02_1033 + 13550955-13551700,13552837-13553290,13553451-135536... 29 4.9
03_02_1031 + 13541327-13542072,13543209-13543662,13543823-135440... 29 4.9
03_06_0560 + 34726338-34727243 28 6.5
01_01_0548 - 4033077-4033349,4034007-4034261,4034362-4034533,403... 28 6.5
10_08_0305 - 16644276-16644290,16644611-16645258,16646764-166468... 28 8.6
07_03_1491 + 26953193-26954326 28 8.6
07_01_0972 - 8176013-8176960 28 8.6
04_04_1534 + 34200538-34200589,34200677-34200857,34201701-342018... 28 8.6
>02_05_1227 -
35076047-35076217,35076737-35076797,35077038-35077123,
35077213-35077301,35077685-35077766,35078094-35078136,
35078211-35078284,35078492-35078561,35078747-35078816,
35079275-35079369,35079473-35079549,35080725-35080760
Length = 317
Score = 75.8 bits (178), Expect = 3e-14
Identities = 32/50 (64%), Positives = 40/50 (80%)
Frame = +2
Query: 509 AYVWTQGDDGKWATTLVLLRINRAATCVKWSPMENKFAVGSGARLISICY 658
+YVWTQ + W TLV+L++NRAA CV+WSP ENKFAVGSGA+ + ICY
Sbjct: 38 SYVWTQ-EGHDWVPTLVILKLNRAALCVQWSPKENKFAVGSGAKSVCICY 86
Score = 33.9 bits (74), Expect = 0.13
Identities = 11/56 (19%), Positives = 30/56 (53%)
Frame = +3
Query: 330 WNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCS 497
W++ ++I ++ +++ +EG+DW T +++ + + + W+P N+ S
Sbjct: 22 WSRSSNKIVTVSHDRNSYVWTQEGHDWVPTLVILKLNRAALCVQWSPKENKFAVGS 77
Score = 33.1 bits (72), Expect = 0.23
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +3
Query: 435 HDLRVMGIDWAPNTNRIVTCSVDR 506
HD V GIDW+ ++N+IVT S DR
Sbjct: 13 HDQIVSGIDWSRSSNKIVTVSHDR 36
Score = 31.9 bits (69), Expect = 0.53
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +1
Query: 658 FEKENNWWVSKHIKKPIRSTV 720
+E++NNWW+SK ++K S+V
Sbjct: 87 YEQDNNWWISKVVRKKHESSV 107
Score = 31.1 bits (67), Expect = 0.92
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Frame = +3
Query: 321 CHAWNKDRSQIAFSPNNNEVHI--YKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTC 494
C W+ ++ A V I Y+++ N W +H+ V + W PN + T
Sbjct: 63 CVQWSPKENKFAVGSGAKSVCICYYEQDNNWWISKVVRKKHESSVTSVAWHPNNILLATT 122
Query: 495 SVDRK 509
S D K
Sbjct: 123 STDGK 127
>07_01_1005 +
8509777-8509968,8510059-8510205,8510326-8510544,
8510652-8510761,8511337-8511391,8511447-8511631,
8512537-8512599,8513713-8513782,8514159-8514242,
8515925-8516159,8516213-8516517
Length = 554
Score = 37.1 bits (82), Expect = 0.014
Identities = 21/85 (24%), Positives = 42/85 (49%)
Frame = +3
Query: 327 AWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDR 506
AW+ D +A + ++ I++ G D++ L H+ V + W+ + + + TCS D+
Sbjct: 79 AWSPDGKLLATASFDSTTAIWEYSGGDFECVATLEGHENEVKSVSWSASGSLLATCSRDK 138
Query: 507 KLTSGLKEMMGNGQLLLFFCVSTEQ 581
+ + EM + + CVS +Q
Sbjct: 139 SV--WIWEMQPGNE---YECVSVQQ 158
>12_01_0190 -
1404374-1404402,1404491-1404558,1404830-1404967,
1405414-1405465,1405570-1405669,1406938-1407088,
1407212-1407311,1407471-1407585,1407786-1407950,
1408050-1408105,1408199-1408256
Length = 343
Score = 35.9 bits (79), Expect = 0.032
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +3
Query: 327 AWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLV-EHDLRVMGIDWAPNTNRIV 488
+WN + +AF N+V ++ E D K++ L +H V ++W PN+ +++
Sbjct: 106 SWNPHKHCLAFVSGKNQVTVHDFEEPDNKESYILTSDHQKDVKAVEWRPNSGKVI 160
>11_01_0189 -
1493618-1493637,1493728-1493795,1494070-1494207,
1494647-1494698,1494803-1494902,1495606-1495681,
1495757-1495844,1496248-1496342,1496506-1496605,
1496765-1496879,1497077-1497241,1497362-1497547
Length = 400
Score = 35.1 bits (77), Expect = 0.057
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +3
Query: 327 AWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLV-EHDLRVMGIDWAPNTNRIV 488
+WN + +AF N+V ++ E D K++ L +H V ++W PN+ +++
Sbjct: 130 SWNPHKHCLAFVSGKNQVTVHDFEEPDNKESYILTSDHQKDVKAVEWRPNSGKMI 184
>08_01_0515 -
4490855-4490902,4490992-4491072,4491752-4491823,
4492296-4492373,4493316-4493444,4493862-4493942,
4494064-4494205,4494672-4494865,4494962-4495027,
4495108-4495194,4495326-4495376
Length = 342
Score = 33.9 bits (74), Expect = 0.13
Identities = 19/67 (28%), Positives = 30/67 (44%)
Frame = +3
Query: 312 PITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVT 491
P+ C AW D + + + +V ++ QT + HD V I W P N +V+
Sbjct: 68 PVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQAQT--VAMHDAPVKEIAWIPQMNLLVS 125
Query: 492 CSVDRKL 512
S D+ L
Sbjct: 126 GSWDKTL 132
>09_02_0030 +
3115502-3115750,3115835-3116104,3116193-3116633,
3116697-3116783,3116872-3116973,3117532-3117631,
3117791-3117807
Length = 421
Score = 32.7 bits (71), Expect = 0.30
Identities = 20/77 (25%), Positives = 37/77 (48%)
Frame = +3
Query: 288 LTFGDSCAPITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWA 467
+T + PIT +W+ D IA N++++ ++ N +T + V H RV + W
Sbjct: 133 VTIDEDDGPITSVSWSCDGQWIAVGLNSSDIQLWDTSSNRMLRTLHGV-HQSRVGSLAW- 190
Query: 468 PNTNRIVTCSVDRKLTS 518
N N + T +D + +
Sbjct: 191 -NKNILTTGGMDGNIVN 206
>09_02_0022 +
3065644-3065953,3066048-3067162,3067261-3067437,
3067535-3067648,3068614-3068718,3068930-3069064,
3069148-3069203,3069277-3069382,3069515-3069631,
3069705-3069831,3069915-3070141,3070164-3070727
Length = 1050
Score = 32.7 bits (71), Expect = 0.30
Identities = 19/74 (25%), Positives = 34/74 (45%)
Frame = +3
Query: 291 TFGDSCAPITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAP 470
TFG + W+ D +A N V +Y ++ + T EH+ V + W+P
Sbjct: 201 TFGSDHSINNALCWSPDGQFLAVPGLRNNVVMYDRDTGEEVFTLK-GEHEQPVCSLCWSP 259
Query: 471 NTNRIVTCSVDRKL 512
N +VT +D+++
Sbjct: 260 NGRYLVTAGLDKQV 273
>02_01_0283 + 1903869-1904786
Length = 305
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Frame = +3
Query: 282 QTLTFGDSCAPITCHAWNKDR--SQIAFSPNNNEVHIYKK--EGNDWKQTNNLVEHDLRV 449
Q T P+ AW + S +A + V I+K+ + ++W Q + +EH V
Sbjct: 47 QLATLSGHQGPVWQVAWAHPKYGSLLASCSYDGRVIIWKEGSKPDEWAQAHTFIEHKSSV 106
Query: 450 MGIDWAPN 473
I WAP+
Sbjct: 107 NSIAWAPH 114
>02_02_0528 +
11199799-11200470,11201850-11201951,11202858-11203487,
11204287-11204547
Length = 554
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +3
Query: 351 IAFSPNNNEVHIYK-KEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVD 503
+A + N+ I+K E + + L HD VM + W+P+ +++TC ++
Sbjct: 245 LASASNDKSAIIWKVDEDGELLLKHTLTGHDKPVMMVAWSPDDCQLLTCGME 296
>09_06_0292 +
22075647-22075691,22077394-22077507,22077602-22077841,
22077926-22078003,22078094-22078162,22078420-22078545,
22079108-22079188,22079272-22079460,22079597-22080434,
22082290-22082411,22082482-22082701,22082910-22083055,
22083260-22083566,22083886-22084136,22084294-22084533,
22084930-22085238
Length = 1124
Score = 29.1 bits (62), Expect = 3.7
Identities = 18/67 (26%), Positives = 30/67 (44%)
Frame = +3
Query: 369 NNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRKLTSGLKEMMGNGQ 548
N EV + K + + +H R + I++ IV C VD+ S +++ +GNG
Sbjct: 157 NAEVRKFSKHCRSCDKCVDGFDHHCR-LAIEFGVGIAVIVLCFVDKNALSNIQDKLGNGM 215
Query: 549 LLLFFCV 569
F V
Sbjct: 216 TRAPFAV 222
>03_02_1033 +
13550955-13551700,13552837-13553290,13553451-13553648,
13553726-13553807,13554496-13554590
Length = 524
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 405 DWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRKL 512
D+K +LV H+ +V +D + + +IVT S DR +
Sbjct: 472 DYKPIKSLVAHESKVTSLDISGDGQQIVTVSHDRTI 507
>03_02_1031 +
13541327-13542072,13543209-13543662,13543823-13544020,
13544098-13544179,13544868-13544962
Length = 524
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 405 DWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRKL 512
D+K +LV H+ +V +D + + +IVT S DR +
Sbjct: 472 DYKPIKSLVAHESKVTSLDISGDGQQIVTVSHDRTI 507
>03_06_0560 + 34726338-34727243
Length = 301
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/56 (25%), Positives = 24/56 (42%)
Frame = +2
Query: 515 VWTQGDDGKWATTLVLLRINRAATCVKWSPMENKFAVGSGARLISICYLRRKIIGG 682
VW +G G+W+ V + + W+P E + G+ SI + + GG
Sbjct: 85 VWKEGAAGQWSQAHVFDNHKSSLNSIAWAPYELGLCLACGSSDGSISVMTMRPDGG 140
>01_01_0548 -
4033077-4033349,4034007-4034261,4034362-4034533,
4034616-4034839,4035168-4035332,4035591-4035881,
4035971-4036303,4036391-4036485,4036570-4036689,
4036778-4036934,4037176-4037279,4037383-4037543,
4037636-4037952,4038655-4038936,4039020-4039321,
4039453-4039543,4040227-4040280,4040367-4040684,
4041008-4041092,4041178-4041266,4041474-4041594,
4042136-4042431
Length = 1434
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/49 (28%), Positives = 31/49 (63%)
Frame = +3
Query: 411 KQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRKLTSGLKEMMGNGQLLL 557
KQT+ + E+ ++++G+D +T IV + + ++ G K+ + G+LL+
Sbjct: 310 KQTSLVAEYIMKILGLDICADT--IVGDEMIKGISGGQKKRLTTGELLV 356
>10_08_0305 -
16644276-16644290,16644611-16645258,16646764-16646865,
16646980-16647111,16647574-16648242
Length = 521
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 330 WNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNN-LVEHDLRVMGIDWAPNTNRIVTC 494
++ D + +A S ++ I+K E +D + LV H + + W+PN ++TC
Sbjct: 281 FSNDGNYLASSSSDCTAIIWKVEEDDTLTKKHCLVGHKNPISFVAWSPNDRMLLTC 336
>07_03_1491 + 26953193-26954326
Length = 377
Score = 27.9 bits (59), Expect = 8.6
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = -1
Query: 535 IISLSPDVSLRSTEHVTIRLVLGAQS-IPI-TLRSCSTRLFVCFQSFPSF 392
I SLSP +SL T V + LVLG S I + +R S F F+ P+F
Sbjct: 15 IWSLSPSLSLVVTTSVALLLVLGGVSGIRVNVIRLPSASPFPAFREAPAF 64
>07_01_0972 - 8176013-8176960
Length = 315
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/56 (21%), Positives = 23/56 (41%)
Frame = +2
Query: 515 VWTQGDDGKWATTLVLLRINRAATCVKWSPMENKFAVGSGARLISICYLRRKIIGG 682
+W +G G W+ V + + W+P E + G+ +I + + GG
Sbjct: 85 IWKEGAGGHWSQAHVFTDHKSSVNSIAWAPYEVGLCLACGSSDGTISVMTMRADGG 140
>04_04_1534 +
34200538-34200589,34200677-34200857,34201701-34201842,
34201963-34202032,34202169-34202302
Length = 192
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -3
Query: 488 NNTVGVGSPINPHHSKVVFHKVVCLLPVISFLFVYVNFI 372
N + VG I + VF KV+ +L V+S++ + NF+
Sbjct: 105 NKVLAVGHDIAIKRDRSVFIKVILILWVVSYIGMLFNFL 143
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,947,328
Number of Sequences: 37544
Number of extensions: 391372
Number of successful extensions: 829
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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