Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00801
(721 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34832| Best HMM Match : SAP (HMM E-Value=1.4e-07) 33 0.31
SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054) 32 0.54
SB_48086| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.71
SB_26293| Best HMM Match : WD40 (HMM E-Value=1.1e-15) 31 1.2
SB_15674| Best HMM Match : Tetradecapep (HMM E-Value=2) 31 1.2
SB_48808| Best HMM Match : DEAD (HMM E-Value=0.029) 30 2.2
SB_25971| Best HMM Match : Sushi (HMM E-Value=0.54) 30 2.2
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_29629| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_5745| Best HMM Match : Extensin_2 (HMM E-Value=0.43) 28 6.6
SB_41907| Best HMM Match : Reprolysin (HMM E-Value=9.2e-05) 28 8.8
SB_11879| Best HMM Match : WD40 (HMM E-Value=5.8e-21) 28 8.8
SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_14208| Best HMM Match : Img2 (HMM E-Value=8.6) 28 8.8
>SB_34832| Best HMM Match : SAP (HMM E-Value=1.4e-07)
Length = 1054
Score = 32.7 bits (71), Expect = 0.31
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +3
Query: 366 NNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWA-PNTNRIVTCSVDRKLTSGLKEMMGN 542
N V +Y ++ ++++ N+LV DL + ++ PN+ + C+V R +++ GN
Sbjct: 386 NGGGVCLYVRDSHNYRIRNDLVPEDLEAVCVEIIKPNSKPFIVCTVYRPFIISSRDLNGN 445
>SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)
Length = 1079
Score = 31.9 bits (69), Expect = 0.54
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +3
Query: 387 YKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRKLTSGLKE 530
++KE ND + VE D R ID N R+ T ++L S L++
Sbjct: 681 HRKENNDAETLEEAVEKDARKNDIDGNDNAERLTTAVTKKELQSDLQK 728
>SB_48086| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1353
Score = 31.5 bits (68), Expect = 0.71
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Frame = +3
Query: 312 PITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQ----TNNLVEH-DLRVMGID 461
P H WN + F N +E Y+++G WK+ T +H L+V GID
Sbjct: 1094 PPPLHLWNTPPNGSMFLINRHEFRDYRRDGYTWKKRTKSTTTREDHFKLKVQGID 1148
>SB_26293| Best HMM Match : WD40 (HMM E-Value=1.1e-15)
Length = 140
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Frame = +3
Query: 384 IYKKEGNDWKQTNNLVEHDLRVMGIDWAPN----TNRIVTCSVD-RKLTSGLKEMMGNG 545
++++ G W + L H V + WAPN T+ I +CS D R + E G G
Sbjct: 20 MFRETGGQWVEEQKLEAHSDWVRDVAWAPNVGLPTSTIASCSQDCRVIIWSRNEEEGEG 78
>SB_15674| Best HMM Match : Tetradecapep (HMM E-Value=2)
Length = 234
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 619 CCRVRS*IDINLLFEKENNWWVSKHIKKPIRSTV 720
C RV S D+ L ++ WW +H++K + T+
Sbjct: 84 CARVDSGADVGTLHKEVQYWWTKRHLEKGSKVTL 117
>SB_48808| Best HMM Match : DEAD (HMM E-Value=0.029)
Length = 498
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = -1
Query: 610 LHGRPFHASRCSVDTQKNKSSCPFPIISLSPDVSLRSTEHVTIRLVL 470
LHG H + V T SCPF I+ ++P++ + +H T++++L
Sbjct: 297 LHGDMSHTQKQGVYTAIRDPSCPFKILYVTPEILV--NDH-TLQMIL 340
>SB_25971| Best HMM Match : Sushi (HMM E-Value=0.54)
Length = 275
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +1
Query: 556 CSSAYQPSSDLREMVSHGEQVCCRVRS*IDINLLFEKENNWWVSKHIKKPIRSTV 720
C + YQP S L E +SHG + RV S + + ++ ++ PIR +
Sbjct: 93 CQAGYQPVSRLCEGLSHGSRYVLRVSSRNGVTSFADGSAIRFIEVNVTLPIREAL 147
>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3160
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 366 NNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRI 485
+NNEV + K D +NN VE+D + ID + N +
Sbjct: 1609 SNNEVELAKSTNIDKLVSNNEVEYDAKSTNIDKLVSNNEV 1648
Score = 28.3 bits (60), Expect = 6.6
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +3
Query: 366 NNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRKLTSGLKEMMGNG 545
+NNEV + K + +NN VE+D + ID + N + D K T+ K + NG
Sbjct: 1833 SNNEVELAKSTNINKLVSNNEVEYDAKSTNIDKLVSNNEV---DYDAKSTNIDKLVSNNG 1889
>SB_29629| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 264
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 351 IAFSPNNNEVHIYKKEGNDWK 413
I F PN + H Y+K+G WK
Sbjct: 184 IRFDPNPSIAHRYRKQGRPWK 204
>SB_5745| Best HMM Match : Extensin_2 (HMM E-Value=0.43)
Length = 607
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 324 HAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEH 437
H +N + + ++ N+N+ HIY GND +N +H
Sbjct: 178 HIYNDNSNDHIYNDNSND-HIYNDNGNDHIYNDNSNDH 214
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +3
Query: 324 HAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTN 479
H +N + + ++ N+N+ HIY ND +N +H G D N N
Sbjct: 160 HIYNDNSNDHIYNDNSND-HIYNDNSNDHIYNDNSNDHIYNDNGNDHIYNDN 210
>SB_41907| Best HMM Match : Reprolysin (HMM E-Value=9.2e-05)
Length = 656
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -1
Query: 622 SKLVLHGRPFHASRCSVDTQKNKSSC 545
S L+LHGR +RCS D NK C
Sbjct: 607 SSLILHGRVIDGTRCSSD-DLNKDVC 631
>SB_11879| Best HMM Match : WD40 (HMM E-Value=5.8e-21)
Length = 447
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 396 EGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDR 506
+ N WKQ +L H L V I ++ + RI++ S DR
Sbjct: 235 DANIWKQVCSLPGHSLTVTQIAFSHSGQRILSVSRDR 271
>SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 551 TLVLLRINRAATCVKWSPMENKFAVGSGARLISIC 655
T+ LL +A V + P FA+GS ++++ IC
Sbjct: 837 TIALLEDLQAIRAVAFHPTGKLFAIGSNSKILRIC 871
>SB_14208| Best HMM Match : Img2 (HMM E-Value=8.6)
Length = 387
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = -3
Query: 689 LDTHQLFSFSNSKLISI*LLTRQQTCSPWETISRKSLLG*YAEEQE*LPISHHLLESRR- 513
L H+ S++++ ++ +Q C PW K +LG Y + + ++H L S+R
Sbjct: 97 LPNHETISWTSANILP------RQACPPWPLRDIKQMLGIYKKPPVEVVVAHCLTISKRF 150
Query: 512 KLTVNRTRNN 483
T+N N
Sbjct: 151 AKTLNEDTKN 160
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,218,534
Number of Sequences: 59808
Number of extensions: 464381
Number of successful extensions: 1301
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1297
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -