Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00801
         (721 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110501-4|CAB54510.1|  368|Caenorhabditis elegans Hypothetical ...    94   8e-20
Z81099-1|CAB03187.1|  600|Caenorhabditis elegans Hypothetical pr...    33   0.16 
AL132904-13|CAC35846.4|  778|Caenorhabditis elegans Hypothetical...    32   0.36 
U23412-5|AAK21467.2|  492|Caenorhabditis elegans Hypothetical pr...    32   0.47 
U42835-5|AAO61444.1|  517|Caenorhabditis elegans Uncoordinated p...    31   0.63 
U42835-4|AAA83588.1|  611|Caenorhabditis elegans Uncoordinated p...    31   0.83 
AF324437-1|AAK11613.1|  611|Caenorhabditis elegans UNC-78 protein.     31   0.83 
U23176-7|AAC46713.4|  454|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AL034393-7|CAA22322.2|  337|Caenorhabditis elegans Hypothetical ...    29   2.5  
AC006708-15|AAF60425.1|  504|Caenorhabditis elegans Hypothetical...    29   2.5  
AJ011523-1|CAB38019.1|  760|Caenorhabditis elegans CHE-2 protein...    28   5.8  
AC006635-2|AAK68383.1|  760|Caenorhabditis elegans Abnormal chem...    28   5.8  

>AL110501-4|CAB54510.1|  368|Caenorhabditis elegans Hypothetical
           protein Y79H2A.6 protein.
          Length = 368

 Score = 94.3 bits (224), Expect = 8e-20
 Identities = 37/65 (56%), Positives = 49/65 (75%)
 Frame = +3

Query: 312 PITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVT 491
           PITCHAWNKDR+QIA S ++N++HI++    DW+  + L EHDL V G+DW   TNRIV+
Sbjct: 16  PITCHAWNKDRTQIAVSASSNDIHIFEWRNGDWQSIHTLSEHDLPVTGLDWGTKTNRIVS 75

Query: 492 CSVDR 506
           CS D+
Sbjct: 76  CSQDK 80



 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 34/54 (62%), Positives = 42/54 (77%)
 Frame = +2

Query: 509 AYVWTQGDDGKWATTLVLLRINRAATCVKWSPMENKFAVGSGARLISICYLRRK 670
           A+VWT  D   W   LVL+R NRAAT VKWSP+ENKFAVGSGA+L+S+CY  ++
Sbjct: 82  AFVWTF-DKNVWKPELVLVRFNRAATYVKWSPLENKFAVGSGAKLVSVCYYEKE 134



 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 18/21 (85%), Positives = 20/21 (95%)
 Frame = +1

Query: 658 FEKENNWWVSKHIKKPIRSTV 720
           +EKEN+WWVSK IKKPIRSTV
Sbjct: 131 YEKENDWWVSKQIKKPIRSTV 151


>Z81099-1|CAB03187.1|  600|Caenorhabditis elegans Hypothetical
           protein K08F9.2 protein.
          Length = 600

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 14/65 (21%), Positives = 32/65 (49%)
 Frame = +3

Query: 318 TCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCS 497
           TC A+  ++S +A    + +VH+YK  G+   +    +EH   +  + ++ +   +    
Sbjct: 440 TCVAFCAEKSLVAVGGKDAKVHVYKLNGDGRLEELKKIEHSAEITAVSFSDDGEYLAVTD 499

Query: 498 VDRKL 512
           + RK+
Sbjct: 500 LARKV 504



 Score = 28.3 bits (60), Expect = 5.8
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +3

Query: 309 APITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQT--NNLVEHDLRVMGIDWAPNTNR 482
           A IT  +++ D   +A +    +V  Y     D+  T  N+   H  +V+ + W+P+  R
Sbjct: 481 AEITAVSFSDDGEYLAVTDLARKVIPYSVS-TDFSVTSPNSWTFHTSKVLTVAWSPDNQR 539

Query: 483 IVTCSVD 503
           + T S+D
Sbjct: 540 LATGSID 546


>AL132904-13|CAC35846.4|  778|Caenorhabditis elegans Hypothetical
           protein Y111B2A.17 protein.
          Length = 778

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 402 NDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDR 506
           ++W + + ++ H L V  I W P+  R++T S DR
Sbjct: 596 SNWSKKSEIIGHQLTVTQIAWNPSGTRLLTVSRDR 630


>U23412-5|AAK21467.2|  492|Caenorhabditis elegans Hypothetical
           protein T10F2.4 protein.
          Length = 492

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 408 WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRKL 512
           W +  +L +H   V G+ +  N   +VTCS+D+ L
Sbjct: 453 WSEVVSLSDHSGPVTGVRFGENARSLVTCSLDKSL 487


>U42835-5|AAO61444.1|  517|Caenorhabditis elegans Uncoordinated
           protein 78, isoform b protein.
          Length = 517

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 15/66 (22%), Positives = 32/66 (48%)
 Frame = +3

Query: 318 TCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCS 497
           +C A + D+  +A    +++VH+YK  G    +   +V H   +  + ++ N   +V   
Sbjct: 452 SCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIV-HPAEITSVAFSNNGAFLVATD 510

Query: 498 VDRKLT 515
             RK++
Sbjct: 511 QSRKVS 516


>U42835-4|AAA83588.1|  611|Caenorhabditis elegans Uncoordinated
           protein 78, isoform a protein.
          Length = 611

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 15/65 (23%), Positives = 31/65 (47%)
 Frame = +3

Query: 318 TCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCS 497
           +C A + D+  +A    +++VH+YK  G    +   +V H   +  + ++ N   +V   
Sbjct: 452 SCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIV-HPAEITSVAFSNNGAFLVATD 510

Query: 498 VDRKL 512
             RK+
Sbjct: 511 QSRKV 515



 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = +3

Query: 309 APITCHAWNKDRSQIAFSPNNNEVHIYKKEGN-DWKQTNNLVEHDLRVMGIDWAPNTNRI 485
           A IT  A++ + + +  +  + +V  Y    N +   TN+   H  +V  + W+P+  R+
Sbjct: 492 AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRL 551

Query: 486 VTCSVDRKL 512
            T S+D  +
Sbjct: 552 ATGSLDNSV 560


>AF324437-1|AAK11613.1|  611|Caenorhabditis elegans UNC-78 protein.
          Length = 611

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 15/65 (23%), Positives = 31/65 (47%)
 Frame = +3

Query: 318 TCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCS 497
           +C A + D+  +A    +++VH+YK  G    +   +V H   +  + ++ N   +V   
Sbjct: 452 SCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIV-HPAEITSVAFSNNGAFLVATD 510

Query: 498 VDRKL 512
             RK+
Sbjct: 511 QSRKV 515



 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = +3

Query: 309 APITCHAWNKDRSQIAFSPNNNEVHIYKKEGN-DWKQTNNLVEHDLRVMGIDWAPNTNRI 485
           A IT  A++ + + +  +  + +V  Y    N +   TN+   H  +V  + W+P+  R+
Sbjct: 492 AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRL 551

Query: 486 VTCSVDRKL 512
            T S+D  +
Sbjct: 552 ATGSLDNSV 560


>U23176-7|AAC46713.4|  454|Caenorhabditis elegans Hypothetical
           protein F21H12.1 protein.
          Length = 454

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 9/33 (27%), Positives = 20/33 (60%)
 Frame = +3

Query: 291 TFGDSCAPITCHAWNKDRSQIAFSPNNNEVHIY 389
           TF   C P++C +W++D  ++  S  +N + ++
Sbjct: 62  TFSAHCLPVSCLSWSRDGRKLLTSSADNSIAMF 94


>AL034393-7|CAA22322.2|  337|Caenorhabditis elegans Hypothetical
           protein Y18D10A.9 protein.
          Length = 337

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +3

Query: 315 ITCHAWNKDRSQIAFSPNNNEVHIYKK-EGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVT 491
           + C  ++K    +A    +  V  +++ E  D+  ++ L  H   V  + W P  + +V+
Sbjct: 114 VKCAVFSKSDEFLATCSRDKSVWFWQQDEDEDFSVSSILQPHTQDVKQVAWHPTEDLLVS 173

Query: 492 CSVDRKL 512
           CS D  +
Sbjct: 174 CSYDSSI 180


>AC006708-15|AAF60425.1|  504|Caenorhabditis elegans Hypothetical
           protein Y110A7A.8 protein.
          Length = 504

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -3

Query: 503 VNRTRNNTVGVGS-PINPHHSKVVFHKVVCLLP 408
           + +T+ N +G  +   NPHH  + FH++V  +P
Sbjct: 261 LGKTKKNLIGFSTVSTNPHHGFIYFHQLVQKMP 293


>AJ011523-1|CAB38019.1|  760|Caenorhabditis elegans CHE-2 protein
           protein.
          Length = 760

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 23/80 (28%), Positives = 32/80 (40%)
 Frame = +3

Query: 315 ITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTC 494
           + C AW+   S + +    N  H Y K             HD  ++  DW P ++ IVT 
Sbjct: 148 VYCVAWDSTSSNVLYC---NADHCYIKSLKMQVAPIKWKAHDGIILCCDWNPTSDLIVTG 204

Query: 495 SVDRKLTSGLKEMMGNGQLL 554
             D K     K   G GQ+L
Sbjct: 205 GEDLK----FKVWDGFGQIL 220


>AC006635-2|AAK68383.1|  760|Caenorhabditis elegans Abnormal
           chemotaxis protein 2 protein.
          Length = 760

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 23/80 (28%), Positives = 32/80 (40%)
 Frame = +3

Query: 315 ITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTC 494
           + C AW+   S + +    N  H Y K             HD  ++  DW P ++ IVT 
Sbjct: 148 VYCVAWDSTSSNVLYC---NADHCYIKSLKMQVAPIKWKAHDGIILCCDWNPTSDLIVTG 204

Query: 495 SVDRKLTSGLKEMMGNGQLL 554
             D K     K   G GQ+L
Sbjct: 205 GEDLK----FKVWDGFGQIL 220


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,737,049
Number of Sequences: 27780
Number of extensions: 356559
Number of successful extensions: 946
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)