Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00801
(721 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g31300.1 68415.m03821 transducin family protein / WD-40 repea... 78 5e-15
At2g30910.2 68415.m03768 transducin family protein / WD-40 repea... 78 5e-15
At2g30910.1 68415.m03767 transducin family protein / WD-40 repea... 78 5e-15
At2g01330.1 68415.m00050 transducin family protein / WD-40 repea... 37 0.015
At5g27080.1 68418.m03231 WD-40 repeat family protein contains 5 ... 33 0.14
At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta... 33 0.25
At2g26060.1 68415.m03129 transducin family protein / WD-40 repea... 33 0.25
At5g27945.1 68418.m03364 transducin family protein / WD-40 repea... 32 0.33
At3g16830.1 68416.m02149 WD-40 repeat family protein contains 10... 32 0.44
At3g10790.1 68416.m01299 F-box family protein contains F-box dom... 31 0.58
At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6 ... 31 1.0
At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6 ... 31 1.0
At1g15850.1 68414.m01902 transducin family protein / WD-40 repea... 31 1.0
At5g27570.1 68418.m03302 WD-40 repeat family protein contains 5 ... 30 1.3
At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta... 30 1.3
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta... 30 1.3
At2g20800.1 68415.m02446 pyridine nucleotide-disulphide oxidored... 30 1.8
At5g26900.1 68418.m03208 WD-40 repeat family protein contains 5 ... 29 3.1
At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6 ... 29 4.1
At3g56900.1 68416.m06329 aladin-related / adracalin-related weak... 29 4.1
At2g19580.1 68415.m02287 senescence-associated protein-related s... 29 4.1
At4g14220.1 68417.m02194 zinc finger (C3HC4-type RING finger) fa... 28 5.4
At5g64630.3 68418.m08123 transducin family protein / WD-40 repea... 28 7.2
At5g19920.1 68418.m02370 transducin family protein / WD-40 repea... 28 7.2
At3g01340.1 68416.m00051 protein transport protein SEC13 family ... 28 7.2
At5g50970.1 68418.m06321 WD-40 repeat family protein contains Pf... 27 9.5
At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 ... 27 9.5
At2g38890.1 68415.m04780 expressed protein and genefinder 27 9.5
>At2g31300.1 68415.m03821 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
identical to putative ARP2/3 protein complex subunit p41
(GI:4432825)[Arabidopsis thaliana]; similar to ARP2/3
complex 41 kDa subunit (P41-ARC) (Actin-related protein
2/3 complex subunit 1B) (SP:Q9WV32) [Mus musculus]
Length = 378
Score = 78.2 bits (184), Expect = 5e-15
Identities = 35/65 (53%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Frame = +3
Query: 315 ITCHAWNKDRSQIAFSPNNNEVHIYKKEGND-WKQTNNLVEHDLRVMGIDWAPNTNRIVT 491
ITCHAW+ D S +A PNN EVHIYK D W++ + L +HD V GIDW+ +N+IVT
Sbjct: 13 ITCHAWSPDLSMVALCPNNTEVHIYKSLSQDHWERLHVLQKHDQIVSGIDWSSKSNKIVT 72
Query: 492 CSVDR 506
S DR
Sbjct: 73 VSHDR 77
Score = 74.9 bits (176), Expect = 5e-14
Identities = 31/54 (57%), Positives = 42/54 (77%)
Frame = +2
Query: 509 AYVWTQGDDGKWATTLVLLRINRAATCVKWSPMENKFAVGSGARLISICYLRRK 670
+YVW+ + +W TLV+LR+NRAA CV+WSP ENKFAVGSGA+ + ICY ++
Sbjct: 79 SYVWSL-EGAEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQE 131
Score = 33.5 bits (73), Expect = 0.14
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +1
Query: 658 FEKENNWWVSKHIKKPIRSTV 720
+E+ENNWWVSK I+K S+V
Sbjct: 128 YEQENNWWVSKLIRKRHESSV 148
Score = 31.9 bits (69), Expect = 0.44
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Frame = +3
Query: 321 CHAWNKDRSQIAFSPNNNEVHI--YKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTC 494
C W+ ++ A V I Y++E N W H+ V + W PN + T
Sbjct: 104 CVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHESSVTSVAWHPNNVLLATT 163
Query: 495 SVDRK 509
S D K
Sbjct: 164 STDGK 168
>At2g30910.2 68415.m03768 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400) (1
weak); similar to ARP2/3 complex 41 kDa subunit
(P41-ARC) (Actin-related protein 2/3 complex subunit 1B)
(SP:O88656) [Rattus norvegicus]
Length = 378
Score = 78.2 bits (184), Expect = 5e-15
Identities = 35/65 (53%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Frame = +3
Query: 315 ITCHAWNKDRSQIAFSPNNNEVHIYKKEGND-WKQTNNLVEHDLRVMGIDWAPNTNRIVT 491
ITCHAW+ D S +A PNN EVHIYK D W++ + L +HD V GIDW+ +N+IVT
Sbjct: 13 ITCHAWSPDLSMVALCPNNTEVHIYKSLSQDHWERLHVLQKHDQIVSGIDWSSKSNKIVT 72
Query: 492 CSVDR 506
S DR
Sbjct: 73 VSHDR 77
Score = 74.9 bits (176), Expect = 5e-14
Identities = 31/54 (57%), Positives = 42/54 (77%)
Frame = +2
Query: 509 AYVWTQGDDGKWATTLVLLRINRAATCVKWSPMENKFAVGSGARLISICYLRRK 670
+YVW+ + +W TLV+LR+NRAA CV+WSP ENKFAVGSGA+ + ICY ++
Sbjct: 79 SYVWSL-EGAEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQE 131
Score = 33.5 bits (73), Expect = 0.14
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +1
Query: 658 FEKENNWWVSKHIKKPIRSTV 720
+E+ENNWWVSK I+K S+V
Sbjct: 128 YEQENNWWVSKLIRKRHESSV 148
Score = 31.9 bits (69), Expect = 0.44
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Frame = +3
Query: 321 CHAWNKDRSQIAFSPNNNEVHI--YKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTC 494
C W+ ++ A V I Y++E N W H+ V + W PN + T
Sbjct: 104 CVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHESSVTSVAWHPNNVLLATT 163
Query: 495 SVDRK 509
S D K
Sbjct: 164 STDGK 168
>At2g30910.1 68415.m03767 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400) (1
weak); similar to ARP2/3 complex 41 kDa subunit
(P41-ARC) (Actin-related protein 2/3 complex subunit 1B)
(SP:O88656) [Rattus norvegicus]
Length = 378
Score = 78.2 bits (184), Expect = 5e-15
Identities = 35/65 (53%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Frame = +3
Query: 315 ITCHAWNKDRSQIAFSPNNNEVHIYKKEGND-WKQTNNLVEHDLRVMGIDWAPNTNRIVT 491
ITCHAW+ D S +A PNN EVHIYK D W++ + L +HD V GIDW+ +N+IVT
Sbjct: 13 ITCHAWSPDLSMVALCPNNTEVHIYKSLSQDHWERLHVLQKHDQIVSGIDWSSKSNKIVT 72
Query: 492 CSVDR 506
S DR
Sbjct: 73 VSHDR 77
Score = 74.9 bits (176), Expect = 5e-14
Identities = 31/54 (57%), Positives = 42/54 (77%)
Frame = +2
Query: 509 AYVWTQGDDGKWATTLVLLRINRAATCVKWSPMENKFAVGSGARLISICYLRRK 670
+YVW+ + +W TLV+LR+NRAA CV+WSP ENKFAVGSGA+ + ICY ++
Sbjct: 79 SYVWSL-EGAEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQE 131
Score = 33.5 bits (73), Expect = 0.14
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +1
Query: 658 FEKENNWWVSKHIKKPIRSTV 720
+E+ENNWWVSK I+K S+V
Sbjct: 128 YEQENNWWVSKLIRKRHESSV 148
Score = 31.9 bits (69), Expect = 0.44
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Frame = +3
Query: 321 CHAWNKDRSQIAFSPNNNEVHI--YKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTC 494
C W+ ++ A V I Y++E N W H+ V + W PN + T
Sbjct: 104 CVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHESSVTSVAWHPNNVLLATT 163
Query: 495 SVDRK 509
S D K
Sbjct: 164 STDGK 168
>At2g01330.1 68415.m00050 transducin family protein / WD-40 repeat
family protein contains 10 WD-40 repeats (PF00400);
similar to 66kDa stress protein (SWISS-PROT: P90587)[
Physarum polycephalum (Slime mold)]
Length = 474
Score = 36.7 bits (81), Expect = 0.015
Identities = 17/63 (26%), Positives = 31/63 (49%)
Frame = +3
Query: 315 ITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTC 494
+T ++ D + A N E ++ +E K NN++ H R+ + W+PN + T
Sbjct: 359 LTVIRYSPDLTMFASGDANREAVVWDRETKQVK-LNNMLFHTARINSLAWSPNNKMVATG 417
Query: 495 SVD 503
S+D
Sbjct: 418 SID 420
>At5g27080.1 68418.m03231 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis};
Length = 466
Score = 33.5 bits (73), Expect = 0.14
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = +3
Query: 279 AQTLTFGDSCAPITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLV-EHDLRVMG 455
++ +T + P+T W +D +A +N+EV ++ N +Q L+ H+ RV
Sbjct: 156 SELVTIDEDKGPVTSINWTQDGLDLAVGLDNSEVQLWDFVSN--RQVRTLIGGHESRVGS 213
Query: 456 IDWAPNTNRIVTCSVDRKLTS 518
+ W N + + T +D K+ +
Sbjct: 214 LAW--NNHILTTGGMDGKIVN 232
>At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 315
Score = 32.7 bits (71), Expect = 0.25
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 438 DLRVMGIDWAPNTNRIVTCSVDRKL 512
DL+V +DW P NRIV+ S D +L
Sbjct: 3 DLQVYSLDWTPERNRIVSASQDGRL 27
>At2g26060.1 68415.m03129 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to WD40-repeat containing protein Ciao 1
(SP:O76071) [Homo sapiens]
Length = 352
Score = 32.7 bits (71), Expect = 0.25
Identities = 14/62 (22%), Positives = 31/62 (50%)
Frame = +3
Query: 327 AWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDR 506
AW+ +A + + I+K G++++ + L H+ V + W + + + TCS D+
Sbjct: 81 AWSPSGQLLATASFDGTTGIWKNYGSEFECISTLEGHENEVKSVSWNASGSCLATCSRDK 140
Query: 507 KL 512
+
Sbjct: 141 SV 142
Score = 31.9 bits (69), Expect = 0.44
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +3
Query: 327 AWNKDRSQIAFSPNNNEVHIYKK-EGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVD 503
+WN S +A + V I++ EGN++ L H V + W P + + +CS D
Sbjct: 125 SWNASGSCLATCSRDKSVWIWEVLEGNEYDCAAVLTGHTQDVKMVQWHPTMDVLFSCSYD 184
Query: 504 RKL 512
+
Sbjct: 185 NTI 187
>At5g27945.1 68418.m03364 transducin family protein / WD-40 repeat
family protein fizzy-related (FZR); contains 6 WD-40
repeats (PF00400); WD-repeat protein,
carrot,(gi:2253631) PIR:T14352
Length = 428
Score = 32.3 bits (70), Expect = 0.33
Identities = 20/80 (25%), Positives = 38/80 (47%)
Frame = +3
Query: 279 AQTLTFGDSCAPITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGI 458
++ +T D P+T W +D +A +N+EV ++ N +T H+ RV +
Sbjct: 143 SKLVTIDDENGPVTSINWTQDGLDLAVGLDNSEVQVWDCVSNRHVRTLR-GGHESRVGSL 201
Query: 459 DWAPNTNRIVTCSVDRKLTS 518
W N + + T +D K+ +
Sbjct: 202 AW--NNHILTTGGMDGKIVN 219
>At3g16830.1 68416.m02149 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 31.9 bits (69), Expect = 0.44
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Frame = +3
Query: 315 ITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWA-PNTNR-IV 488
+T AW+ D + + S + +H+Y +G+D +Q + H V + +A PN +V
Sbjct: 412 VTRVAWSPDGNLLGVSFTKHLIHVYAYQGSDLRQHLEIDAHVGCVNDLAFAHPNKQMCVV 471
Query: 489 TCSVDR 506
TC D+
Sbjct: 472 TCGDDK 477
>At3g10790.1 68416.m01299 F-box family protein contains F-box domain
Pfam:PF00646
Length = 319
Score = 31.5 bits (68), Expect = 0.58
Identities = 14/60 (23%), Positives = 31/60 (51%)
Frame = +3
Query: 408 WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRKLTSGLKEMMGNGQLLLFFCVSTEQRL 587
+ ++ N+V + +V + R++ C+++ LT G + + NG + F V+ +Q L
Sbjct: 191 YSRSGNIVSKEHKVFTLGCKQKKWRMIECTINHYLTPGTQGIFSNGVIYYFARVNDDQSL 250
>At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota,PID:g2253631
Length = 457
Score = 30.7 bits (66), Expect = 1.0
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +3
Query: 279 AQTLTFGDSCAPITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLV-EHDLRVMG 455
++ +T + P+T W D +A NN+EV ++ N +Q L H RV
Sbjct: 173 SELVTIDEEKGPVTSINWAPDGRHVAVGLNNSEVQLWDSASN--RQLRTLKGGHQSRVGS 230
Query: 456 IDWAPNTNRIVTCSVD 503
+ W N + + T +D
Sbjct: 231 LAW--NNHILTTGGMD 244
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Frame = +3
Query: 330 WNKDRSQIAFSPNNNEVHIYKK---EGNDWKQ-TNNLVEHDLRVMGIDWAP 470
W+ Q+A N+N VHI+ + N Q + L EH V + W P
Sbjct: 274 WSGSGQQLASGGNDNVVHIWDRSVASSNSTTQWLHRLEEHTSAVKALAWCP 324
>At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota, PID:g2253631
Length = 447
Score = 30.7 bits (66), Expect = 1.0
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +3
Query: 279 AQTLTFGDSCAPITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLV-EHDLRVMG 455
++ +T + P+T W D +A NN+EV ++ N +Q L H RV
Sbjct: 163 SELVTIDEEKGPVTSINWAPDGRHVAVGLNNSEVQLWDSASN--RQLRTLKGGHQSRVGS 220
Query: 456 IDWAPNTNRIVTCSVD 503
+ W N + + T +D
Sbjct: 221 LAW--NNHILTTGGMD 234
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Frame = +3
Query: 330 WNKDRSQIAFSPNNNEVHIYKK---EGNDWKQ-TNNLVEHDLRVMGIDWAP 470
W+ Q+A N+N VHI+ + N Q + L EH V + W P
Sbjct: 264 WSGSGQQLASGGNDNVVHIWDRSVASSNSTTQWLHRLEEHTSAVKALAWCP 314
>At1g15850.1 68414.m01902 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400);
mRNA-associated protein mrnp 41 (SP:P78406) [Homo
sapiens]; similar to mitotic checkpoint protein
GI:9294423 from [Arabidopsis thaliana]
Length = 140
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/67 (25%), Positives = 28/67 (41%)
Frame = +3
Query: 312 PITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVT 491
P+ C AW D + + + + ++ Q + + HD I W P N +VT
Sbjct: 75 PVLCSAWKDDGTTVFTGGCDKQAKMWPLLSG--AQPSTVAMHDAPFNQIAWIPGMNLLVT 132
Query: 492 CSVDRKL 512
S D+ L
Sbjct: 133 GSWDKTL 139
>At5g27570.1 68418.m03302 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis}; similar to "Will die slowly" protein,
Drosophia; putative cdc20 protein - Arabidopsis
thaliana, EMBL:AF029262
Length = 411
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = +3
Query: 288 LTFGDSCAPITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNL-VEHDLRVMGIDW 464
+T + P+T W +D +A +N+EV ++ N +Q L H+ RV + W
Sbjct: 128 VTIDEEEGPVTSINWTQDGLDLAIGLDNSEVQLWDCVSN--RQVRTLRGGHESRVGSLAW 185
Query: 465 APNTNRIVTCSVDRKLTS 518
N + + T +D K+ +
Sbjct: 186 --NNHILTTGGMDGKIVN 201
>At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 347
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 435 HDLRVMGIDWAPNTNRIVTCSVDRKL 512
H +V +DW P NRIV+ S D +L
Sbjct: 64 HTGKVYSLDWTPERNRIVSASQDGRL 89
>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 377
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 435 HDLRVMGIDWAPNTNRIVTCSVDRKL 512
H +V +DW P NRIV+ S D +L
Sbjct: 64 HTGKVYSLDWTPERNRIVSASQDGRL 89
>At2g20800.1 68415.m02446 pyridine nucleotide-disulphide
oxidoreductase family protein similar to GI:3718005
alternative NADH-dehydrogenase {Yarrowia lipolytica} ;
contains Pfam profile PF00070: Pyridine
nucleotide-disulphide oxidoreductase
Length = 582
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +3
Query: 336 KDRSQIAFSPNNNEVHIYKKEGNDWKQTNNL-VEHDLRVMGIDWAPNT 476
K+ + +N ++H KEG+ K T +++D+ ++ + PNT
Sbjct: 133 KEAECVKIDASNKKIHCRSKEGSSLKGTTEFDMDYDILILAVGAKPNT 180
>At5g26900.1 68418.m03208 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis}; WD-repeat protein, carrot, PIR:T14352
Length = 444
Score = 29.1 bits (62), Expect = 3.1
Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = +3
Query: 279 AQTLTFGDSCAPITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNL-VEHDLRVMG 455
++ +T + P+T W +D +A +N+EV ++ N +Q L H+ RV
Sbjct: 159 SELVTIDEDKGPVTSINWTQDGLDLAVGLDNSEVQLWDCVSN--RQVRTLRGGHESRVGS 216
Query: 456 IDWAPNTNRIVTCSVDRKLTS 518
+ W + + + T +D K+ +
Sbjct: 217 LAW--DNHILTTGGMDGKIVN 235
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Frame = +3
Query: 330 WNKDRSQIAFSPNNNEVHIYKKEGNDWKQT----NNLVEHDLRVMGIDWAP 470
W++ ++ A N+N VHI+ + KQT + EH V + W P
Sbjct: 260 WSESGNKQASGGNDNVVHIWDRSLASSKQTRQWLHRFEEHTAAVRALAWCP 310
>At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to Fzr1
(GI:6463679){Homo sapiens}
Length = 481
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/53 (22%), Positives = 26/53 (49%)
Frame = +3
Query: 330 WNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIV 488
W+ D ++A N+N++ ++ + L EH V I W+P+ + ++
Sbjct: 306 WSHDDRELASGGNDNQLLVWNNHSQ--QPILKLTEHTAAVKAITWSPHQSSLL 356
>At3g56900.1 68416.m06329 aladin-related / adracalin-related weak
similarity to SP|Q9NRG9 Aladin (Adracalin) (GL003) {Homo
sapiens}; non-consensus AT-AC splice sites at intron 6
Length = 447
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +3
Query: 327 AWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLR-VMGIDWAPN 473
+W++ + IAF N+V I E D K+ L R V ++W PN
Sbjct: 106 SWHQGKHIIAFISGANQVTIRDYEDKDEKEPCILTSDSQRNVKALEWRPN 155
>At2g19580.1 68415.m02287 senescence-associated protein-related
similar to senescence-associated protein 5 [Hemerocallis
hybrid cultivar] gi|3551954|gb|AAC34855; contains a
transmembrane 4 family signature; rare (GC) splice donor
consensus found instead of (GT) at intron 2.
Length = 270
Score = 28.7 bits (61), Expect = 4.1
Identities = 9/38 (23%), Positives = 21/38 (55%)
Frame = +3
Query: 309 APITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTN 422
A C+ W+ D+SQ+ ++ N+ + + +W++ N
Sbjct: 195 ADADCYLWSNDQSQLCYNCNSCKAGLLGNLRKEWRKAN 232
>At4g14220.1 68417.m02194 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 371
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -3
Query: 545 PISHHLLESRRKLTVNRTRNNTVGVGSPINPHHSKVVFH 429
P S LL + K + +TRN + SPI+ HHS FH
Sbjct: 95 PASQELLAAVEKERLLKTRN--ISSSSPISIHHSHDDFH 131
>At5g64630.3 68418.m08123 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 428
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Frame = +3
Query: 342 RSQIAFSPNNNEVHIYK----KEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVD 503
R +A + E+ I+K + WK +L H V+ + W+P+ +++ SVD
Sbjct: 17 RELLASGADGGELFIWKLHPSETNQSWKVHKSLSFHRKDVLDLQWSPDDAYLISGSVD 74
>At5g19920.1 68418.m02370 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
related to TipD protein (SP:O15736, PIR:T08602)
[Dictyostelium discoideum]; related to WD-repeat protein
RBAP1 (GI:9716495) [Zea mays]
Length = 656
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = +3
Query: 396 EGNDWKQTNNLVEHDLR---VMGIDWAPNTNRIVTCSVDRK 509
E N WK T L+ DL VMG+ + N +++C DR+
Sbjct: 474 ENNAWKPT--LLHRDLHSSAVMGVTGMRHNNHVLSCGDDRR 512
>At3g01340.1 68416.m00051 protein transport protein SEC13 family
protein / WD-40 repeat family protein similar to Protein
transport protein SEC13 SP|Q04491 {Saccharomyces
cerevisiae} and SEC13 (SP:P53024) [Pichia pastoris]
Length = 302
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +3
Query: 312 PITCHAWNKDR--SQIAFSPNNNEVHIYKKEG-NDWKQTNNLVEHDLRVMGIDWAPN 473
P+ AW + S +A + ++ ++K+ N W Q + +H + V I WAP+
Sbjct: 58 PVWQVAWAHPKFGSLLASCSYDGQIILWKEGNQNQWTQAHVFTDHKVSVNSIAWAPH 114
>At5g50970.1 68418.m06321 WD-40 repeat family protein contains Pfam
profile PF00400: WD domain, G-beta repeat
Length = 512
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/68 (20%), Positives = 30/68 (44%)
Frame = +3
Query: 300 DSCAPITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTN 479
+S + + +W+ D I + +H++ N K T ++ H RV +W +
Sbjct: 436 ESQSALINQSWSPDGLYITSGSVDPVIHVFDIRYNARKPTQSIKAHQKRVFKAEWHYSQP 495
Query: 480 RIVTCSVD 503
+++ S D
Sbjct: 496 LLISISSD 503
>At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 WD
repeats (PF00400); similar to Fzr1 (GI:6463679) {Homo
sapiens}; similar to WD repeat protein Srw1
-Schizosaccharomyces pombe,PID:d1023012
Length = 475
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/48 (22%), Positives = 23/48 (47%)
Frame = +3
Query: 330 WNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPN 473
W+ D ++A N+N++ ++ + + EH V I W+P+
Sbjct: 300 WSSDNRELASGGNDNKLFVWNQHST--QPVLRFCEHAAAVKAIAWSPH 345
>At2g38890.1 68415.m04780 expressed protein and genefinder
Length = 298
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +3
Query: 435 HDLRVMGIDWAPNTNRIVTCSVDRKLTSGLKEMMGNGQ 548
HDLR + +PN + VT RKL G+K G Q
Sbjct: 119 HDLRA-SLRNSPNVKQTVTQETHRKLPDGIKRTKGYKQ 155
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,777,088
Number of Sequences: 28952
Number of extensions: 332670
Number of successful extensions: 858
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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