Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00800
(717 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc... 31 0.22
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 28 1.5
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 27 2.0
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 27 2.7
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 27 3.5
SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr 3||... 26 4.7
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual 26 4.7
SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces p... 26 4.7
SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces ... 26 4.7
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 26 6.2
SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces p... 26 6.2
>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
Fep1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 564
Score = 30.7 bits (66), Expect = 0.22
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +1
Query: 328 RRHLAQVAAAPPSEETARPSPYAQHHPPQITLHTRTQKSNGTRKTK 465
R+ L+ ++ PS + SP PQI T T+ SNGT + +
Sbjct: 107 RKSLSPNPSSVPSSTETKASPTPLESKPQIVSDTTTETSNGTSRRR 152
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 572 DAWENRSLPNFSSSEDHLSMISYVRSRYD 658
DAW NR P +SSS D S ++ S D
Sbjct: 487 DAWTNRKRPGYSSSFDGSSQSTFNPSNND 515
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 27.5 bits (58), Expect = 2.0
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 343 QVAAAPPSEETARPSPYAQHHPP 411
QV APP T P+P +HHPP
Sbjct: 726 QVTPAPP---TPAPTPAVKHHPP 745
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 27.1 bits (57), Expect = 2.7
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = -2
Query: 227 LEIFLFLGMKGTRSWSFERYICISAFSPSRCRCTRPLAIAGTEAPVAHTAVIA 69
L FL G +G ++ ICI +C+ P+ +AG E + A IA
Sbjct: 1297 LHEFLVQGYQGVDMHTYHNIICILIEKAEKCK-DEPVILAGIEDNITLIAEIA 1348
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 655 VTRSYIGYHRKMIFTGTEVRKASVLPS 575
+TRSY HR + GT V S+ PS
Sbjct: 423 ITRSYNAKHRPSLVLGTSVNPHSLSPS 449
>SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr
3|||Manual
Length = 264
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 629 MISYVRSRYDQYMYFSINNYHFV 697
M SY S YDQ +YF N YH +
Sbjct: 91 MASY-SSSYDQLLYFRQNYYHHI 112
>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
Length = 503
Score = 26.2 bits (55), Expect = 4.7
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = -3
Query: 583 LPSVWSLPWQRWPL 542
+P W PWQ WP+
Sbjct: 469 IPLDWDRPWQAWPI 482
>SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 506
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +2
Query: 533 YT-SKRPALPWEAPDAWENRSLPNFSSSED 619
YT S RPA EAP+ +EN PN ++ +
Sbjct: 109 YTPSTRPASHTEAPNDFENHETPNTENNNE 138
>SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 539
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 295 LLDNLTLKAP*RRHLAQVAAAPPSE 369
LLDN+ KAP +R+LA AP E
Sbjct: 102 LLDNIKRKAPSKRNLANENTAPVIE 126
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 25.8 bits (54), Expect = 6.2
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2
Query: 503 LRLFMVNINKYTSKRPALPWEAPDAWENRSLPNFSSSEDHLSMI 634
LRL V+ + K+ LP+E P+A RS SS+ +S +
Sbjct: 579 LRLNFVSPGQIGGKKDELPFEDPNAQFIRSFTFRSSNNSRMSQV 622
>SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 348
Score = 25.8 bits (54), Expect = 6.2
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 103 VPAIASGRVQRHRDGENAEIQMYLSKLQDLVPFMPKN 213
+ A SG DG NA + Y++ +LV F+PKN
Sbjct: 77 IGATVSGWAPGPLDGSNAAWREYITLDVNLVYFVPKN 113
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,820,979
Number of Sequences: 5004
Number of extensions: 54912
Number of successful extensions: 168
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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