Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00800
         (717 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0056 + 11751585-11751672,11751741-11752060,11755363-117554...    31   1.2  
09_02_0093 + 4178852-4179220,4179518-4180113,4180214-4181006           29   2.8  
01_06_0728 + 31544005-31544856,31545439-31545597,31545705-31546028     29   2.8  
09_04_0506 - 18188785-18190599                                         29   4.9  
03_02_0026 - 5086596-5086755,5087035-5087105,5087407-5087466,508...    29   4.9  
02_04_0533 + 23719353-23719910,23720012-23720418,23720690-23721023     29   4.9  
06_01_0358 + 2573241-2573324,2573509-2573636,2573769-2573971,257...    28   6.4  
05_01_0593 - 5335134-5335808                                           28   8.5  

>08_02_0056 +
           11751585-11751672,11751741-11752060,11755363-11755483,
           11755950-11756137,11756224-11756355,11756535-11756577,
           11757298-11757395
          Length = 329

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -2

Query: 434 VRVWRVICGGWCWA*GEGLAVSSEGGAAATCAR 336
           V VWR  CGG C    + +A +  GG  A  AR
Sbjct: 37  VAVWRCGCGGGCGGGEDAVAAAMGGGGEADAAR 69


>09_02_0093 + 4178852-4179220,4179518-4180113,4180214-4181006
          Length = 585

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = -2

Query: 407 GWCWA*GEGLAVSSEGGAAATCARWRR*GAFSVKLSNSWVILQR*LKVADISITC*ITSN 228
           GW    G   +  S GG+++T + W R  AFS     S   L + L  AD ++   + +N
Sbjct: 467 GWSRRRGAESSPQSRGGSSSTLSSWGRTAAFSSPTPASMEPLLQVLAAADSTVREGLNAN 526

Query: 227 LE 222
           ++
Sbjct: 527 VQ 528


>01_06_0728 + 31544005-31544856,31545439-31545597,31545705-31546028
          Length = 444

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = +2

Query: 509 LFMVNINKYTSKRPALPWEAPDAWENRSLPNFSSSEDHLSMISYVRSRYDQYMY 670
           +F++ + +       L   A DA ++ +LPNF+  E+ LS +S +    +Q  +
Sbjct: 319 IFLLKLLESCPNLQQLTLSAVDAKDDTALPNFADHEERLSKLSCLTKSLEQLKF 372


>09_04_0506 - 18188785-18190599
          Length = 604

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 316 KAP*RRHLAQVAAAPPSEETARPSPYAQHHPPQ 414
           + P + H+  VAA PP+    RP+P   H PPQ
Sbjct: 103 RQPEKVHIPGVAAVPPAPVPDRPNPV--HLPPQ 133


>03_02_0026 -
           5086596-5086755,5087035-5087105,5087407-5087466,
           5087625-5087684,5088012-5088054,5088130-5088221,
           5088304-5088372,5088458-5088502,5089209-5089317,
           5089579-5089679,5089769-5089861,5089936-5089996,
           5090084-5090187,5091592-5091972
          Length = 482

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -2

Query: 674 RSTYIDRNEIVHRISSKDDLHWN*SSEGFCSPKRLEPPMATLAASRYIY 528
           +ST +DR  I H + S   L+ N S +   +   ++P  A   ASR IY
Sbjct: 328 KSTVLDRAMIEHNLLSASKLYTNISFDELGALLGIDPRKAEKIASRMIY 376


>02_04_0533 + 23719353-23719910,23720012-23720418,23720690-23721023
          Length = 432

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 131 SDTGMAKTLRYKCTSRSSRISYPSCPRIER 220
           +DT +    RYKCT+   R SY    R+ER
Sbjct: 335 ADTFVEHFTRYKCTTAGERKSYGCMQRLER 364


>06_01_0358 +
           2573241-2573324,2573509-2573636,2573769-2573971,
           2574129-2574254,2574522-2574680,2574857-2575050,
           2575251-2575376
          Length = 339

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
 Frame = +1

Query: 58  LKMK--AITAVCATGASVPAIASGRVQRHRDGENAEIQMYLSKLQDLVP-FMPKNRKISK 228
           LKMK  A+  +C   A  P I+ G+  RH             K+Q + P F+PKN  IS 
Sbjct: 212 LKMKNPAVKVICVEPAESPVISGGKPSRH-------------KIQGMGPGFVPKNLDIS- 257

Query: 229 LEVIQHVIDISA 264
             ++  +I ++A
Sbjct: 258 --IVDEIITVTA 267


>05_01_0593 - 5335134-5335808
          Length = 224

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/47 (29%), Positives = 18/47 (38%)
 Frame = +3

Query: 288 HPAVGQFDAEGALASPPCAGRRSPXXXXXXXXXXXXPTPSSANHPPH 428
           H  +G+F     LA+P C  RR+             P   SA   PH
Sbjct: 178 HACLGEFKVGDTLATPACCRRRAVHQECLRRHLAKGPDARSAAAQPH 224


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,142,894
Number of Sequences: 37544
Number of extensions: 400668
Number of successful extensions: 1370
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1366
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)