Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00800
         (717 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    23   2.9  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   8.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   8.8  

>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 145 GENAEIQMYLSKLQDLVPFMPKNRKISKLEVIQHVIDISATF 270
           G N ++    S++ D+V F+ K    S +EV+  V  I  T+
Sbjct: 8   GGNWKMNGTKSEINDIVGFLKKGPLDSNVEVVVGVPSIYLTY 49


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +1

Query: 214 RKISKLEVIQHVIDISATFNQRW 282
           R ISK++ +     +  TF ++W
Sbjct: 68  RSISKIDDVTMEYSVQLTFREQW 90


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 553  VAMGGSRRLGEQKPSELQFQ 612
            V+  GS  LG+Q+PS+ Q Q
Sbjct: 1218 VSNSGSVVLGKQQPSQQQTQ 1237


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +3

Query: 399  TPSSANHPPHTNTEIKRHQKNKTNLTGRR 485
            T +SAN+   TN  + + ++ + N+T  +
Sbjct: 992  TQTSANNDKDTNAVVTQSKEARDNITATK 1020


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,923
Number of Sequences: 438
Number of extensions: 3687
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)