Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00800
         (717 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g02490.1 68415.m00188 hydroxyproline-rich glycoprotein family...    30   1.8  
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family...    30   1.8  
At4g17990.1 68417.m02677 hypothetical protein contains Pfam prof...    29   2.3  
At1g56080.1 68414.m06439 expressed protein                             29   3.1  
At5g46880.1 68418.m05777 homeobox-leucine zipper family protein ...    29   4.1  
At4g28420.1 68417.m04068 aminotransferase, putative tsimilar to ...    28   5.4  
At1g02170.1 68414.m00145 latex-abundant family protein (AMC1) / ...    28   5.4  
At1g24145.1 68414.m03046 expressed protein                             28   7.1  
At1g13940.1 68414.m01637 expressed protein                             28   7.1  
At5g20840.1 68418.m02475 phosphoinositide phosphatase family pro...    27   9.4  
At4g19050.1 68417.m02806 mob1/phocein family protein contains Pf...    27   9.4  
At3g24900.1 68416.m03122 disease resistance family protein / LRR...    27   9.4  

>At2g02490.1 68415.m00188 hydroxyproline-rich glycoprotein family
           protein related to LENOD2 [Lupinus luteus]
           gi|296830|emb|CAA39050;  and genefinder
          Length = 302

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 396 PTPSSANHPPHTNTEIKRHQ 455
           P P S  HPPH NT+I  +Q
Sbjct: 82  PVPPSPGHPPHQNTKISVNQ 101



 Score = 28.7 bits (61), Expect = 4.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 396 PTPSSANHPPHTNTEIKRHQ 455
           P P S  HPPH N +I  +Q
Sbjct: 168 PVPPSLKHPPHQNAKISMNQ 187



 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 396 PTPSSANHPPHTNTEIKRHQ 455
           P P S  HPPH N +I  +Q
Sbjct: 53  PVPPSPGHPPHQNAKISVNQ 72



 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 396 PTPSSANHPPHTNTEIKRHQ 455
           P P S  HPPH N +I  +Q
Sbjct: 111 PVPPSPGHPPHQNAKISVNQ 130


>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 1696

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 349 AAAPPSEETARPSPYAQHHPPQITLHTRTQKSNGTRK 459
           A  PP      P P  Q HP    L+ R+ +SNG R+
Sbjct: 26  APLPPPPPLPPPPPPRQSHPESPNLYGRSTQSNGQRQ 62


>At4g17990.1 68417.m02677 hypothetical protein contains Pfam profile
           PF04776: Protein of unknown function (DUF626)
          Length = 265

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -3

Query: 640 IGYHRKMIFTGTEVRKASVLPSVWSL 563
           +G HRK++ +   ++KASVLP + SL
Sbjct: 10  MGEHRKLLISSDFLKKASVLPDISSL 35


>At1g56080.1 68414.m06439 expressed protein
          Length = 310

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = +3

Query: 405 SSANHPPHTNTEIKRHQKNKTNLTGRRVKCNLG*DYLWLILINIPRSGQRCHGRLQTLGR 584
           S AN PP +++   RH +       R+ +  L  +     L NI     R  GR +TL +
Sbjct: 227 SVANSPPRSHSVSARHPRIDGKEFFRQARSRLSYEQFSAFLANIKELNARKQGREETLQK 286

Query: 585 TE 590
            E
Sbjct: 287 AE 288


>At5g46880.1 68418.m05777 homeobox-leucine zipper family protein /
           lipid-binding START domain-containing protein similar to
           HD-Zip homeo domain OCL4 protein GI:8920425 from [Zea
           mays];  contains Pfam PF00046: Homeobox domain and Pfam
           PF01852: START domain
          Length = 820

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = +1

Query: 283 RITQLLDNLTLKAP*RRHLAQVAAAPPSEETARPSPYAQHHPPQITLHTRTQKSN 447
           R+ + LD L   A  R     + + PPS+    PSP   HH P + L       N
Sbjct: 224 RLREELDRLCCIAS-RYTGRPMQSMPPSQPLINPSPMLPHHQPSLELDMSVYAGN 277


>At4g28420.1 68417.m04068 aminotransferase, putative tsimilar to
           nicotianamine aminotransferase from Hordeum vulgare
           [GI:6498122, GI:6469087]; contains Pfam profile PF00155
           aminotransferase, classes I and II
          Length = 389

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 667 HILIVTRSYIGYHRKMIFTGTEVRKASVLP 578
           +IL+   SY  Y  + +++G EVRK  +LP
Sbjct: 151 NILLPRPSYPHYEARAVYSGLEVRKFDLLP 180


>At1g02170.1 68414.m00145 latex-abundant family protein (AMC1) /
           caspase family protein contains similarity to
           latex-abundant protein [Hevea brasiliensis] gb:AAD13216;
           contains Pfam profile PF00656: ICE-like protease
           (caspase) p20 domain
          Length = 367

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 334 HLAQVAAAPPSEETARPSPYAQHHPP 411
           H+A    APP + ++ PSP  Q H P
Sbjct: 44  HIADPRTAPPPQPSSAPSPPPQIHAP 69


>At1g24145.1 68414.m03046 expressed protein 
          Length = 128

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
 Frame = +3

Query: 123 SSAATPGWRKR*DTNVPLEAPGSRTLHAQE*KDLQIRSDSACYRYI-CDLQSALENHPAV 299
           S  ATPG   R      +E   S+T++  + +  QI+  S C  Y  C   S+L   P +
Sbjct: 57  SKIATPGSTSRHSGQKNIEKEPSKTIYGHQLRPDQIKRGSPCKIYTRCKHSSSLPQPPPL 116

Query: 300 --GQFDAEG 320
                D +G
Sbjct: 117 PSSSIDTQG 125


>At1g13940.1 68414.m01637 expressed protein
          Length = 1005

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 27/107 (25%), Positives = 38/107 (35%)
 Frame = +1

Query: 130  QRHRDGENAEIQMYLSKLQDLVPFMPKNRKISKLEVIQHVIDISATFNQRWRITQLLDNL 309
            QR R G   + +      +D++P +    K    E IQ          + W  T     L
Sbjct: 855  QRPRRGNARKGKQRRDFQRDILPGLLSLSKHEVTEDIQMFDGFMRATGRSWTPT----GL 910

Query: 310  TLKAP*RRHLAQVAAAPPSEETARPSPYAQHHPPQITLHTRTQKSNG 450
            T K    R   + A   P+E    P P     PP +  H   Q +NG
Sbjct: 911  TRKKTGSRGRPRRAITIPAEPVYCPVPAPAPPPPSVQQHVSNQSNNG 957


>At5g20840.1 68418.m02475 phosphoinositide phosphatase family
           protein contains similarity to phosphoinositide
           phosphatase SAC1 [Rattus norvegicus]
           gi|11095248|gb|AAG29810; contains Pfam domain, PF02383:
           SacI homology domain; identical to cDNA SAC domain
           protein 4 (SAC4)  GI:31415724
          Length = 831

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -2

Query: 671 STYIDRNEIVHRISSKDDLHWN*SSEGFCSPKRLEPPMA 555
           S Y+   E +  +S+  D+ W  SSE  C    L  P A
Sbjct: 723 SIYLSEQEDMSSVSNFVDIEWLSSSENLCENDHLSRPSA 761


>At4g19050.1 68417.m02806 mob1/phocein family protein contains Pfam
           PF03637: Mob1/phocein family; contains Pfam F00560:
           Leucine Rich Repeats; contains TIGRFAMS profile
           TIGR01612: reticulocyte binding protein; hypothetical
           protein YIL106w, Saccharomyces cerevisiae, PIR2:S48466
          Length = 1405

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/50 (26%), Positives = 29/50 (58%)
 Frame = +1

Query: 157 EIQMYLSKLQDLVPFMPKNRKISKLEVIQHVIDISATFNQRWRITQLLDN 306
           +++ Y  +++D   +  KN+  ++L++++H +D S T   R  I  L D+
Sbjct: 575 KLESYFDRVKDWKDYKGKNKNFAQLQLLEH-LDFSETKIIRLPIFHLKDS 623


>At3g24900.1 68416.m03122 disease resistance family protein / LRR
           family protein contains leucine rich-repeat domains
           Pfam:PF00560, INTERPRO:IPR001611; similar to Cf-2.2
           [Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 884

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = +2

Query: 497 PRLRLFMVNINKYTSKRPALPWEAPDAWENRSLPNFSSSEDHLSMISYVRSRYDQYMYFS 676
           P LR+  +  NK+T   P      PD +EN    + + +ED    + Y +  Y  Y + S
Sbjct: 629 PELRILEIAGNKFTGSLP------PDFFENWKASSLTMNEDQGLYMVYNKVVYGTYYFTS 682

Query: 677 I 679
           +
Sbjct: 683 L 683


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,897,761
Number of Sequences: 28952
Number of extensions: 300495
Number of successful extensions: 866
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)