Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00799
         (771 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    31   0.24 
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    30   0.42 
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    27   2.2  
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual             26   5.2  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   5.2  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    26   6.9  
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    25   9.1  
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po...    25   9.1  

>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 269 NRQHVLIYRMKSVGESTEPCGTPALMV 189
           N+  + +YR KSV ES EP G P L +
Sbjct: 134 NKYSLYLYREKSVEESDEPSGIPILFI 160


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 29.9 bits (64), Expect = 0.42
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -2

Query: 224 STEPCGTPALMVMVSEQSPSTTTVISAHPKS*RSSCRDPRGFRKMVTS 81
           S++P GTP +       SPSTT V +A   S   + R P+  R+ ++S
Sbjct: 200 SSKPTGTPFVPKSPPSSSPSTTNVSNASTSSAPINPRAPQTRRESISS 247


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 31/104 (29%), Positives = 46/104 (44%)
 Frame = -2

Query: 407 GDSPQRVLHFRHKF*SSLLHHAPRETLMADISRIPRAIICIAMHAINRQHVLIYRMKSVG 228
           GDS +  L F+      ++H   R  L ADI+ +   I+C  ++ + R   L  R + V 
Sbjct: 591 GDSTETSLTFKR-----IIHGLER--LKADIA-LHSEILCFQLYDLKRDGTL--RTEEVV 640

Query: 227 ESTEPCGTPALMVMVSEQSPSTTTVISAHPKS*RSSCRDPRGFR 96
           E +E            E+     TVIS   KS  S C+D R F+
Sbjct: 641 ELSESL-ILLCCYEGDEKDEERLTVISEFLKSCFSGCQDRRSFQ 683


>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
          Length = 629

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 240 HPVYQDMLSIDGMHCYADDSTRDARYIGHQS 332
           H   QD + + G  C+ DDS+ +   + HQ+
Sbjct: 262 HDNEQDDVDLIGWECFFDDSSDELNTLSHQA 292


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1275

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +2

Query: 485  LCHGAAIPGVSLQPSESIGILGVDISSDVQFRSHLEGKAKL 607
            LCH   I  + L P  ++G     + +D  FR+ +     L
Sbjct: 1111 LCHNKGIDVLRLDPKLAVGFPSPSVLNDTLFRNRINNSKPL 1151


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -2

Query: 485 GVLLRSERANLCLYRVELNQVQFTPFGDS 399
           G+L++ ER NL  YRV L   QF P  DS
Sbjct: 688 GILIKPERYNLFKYRVYL--PQFLPPTDS 714


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 360 VSLAPRSERDSDGRYIAHPSCYHLHSNACH 271
           V L   S   SDG+   HPS Y  + N+ H
Sbjct: 276 VPLTSASHSSSDGKSRKHPSPYKPYLNSSH 305


>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 363

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
 Frame = +3

Query: 207 STRFGALPHAFHPVYQDMLSIDGMHCYADDSTRDARYIGHQSLSRSVVQE--RRSKLVSE 380
           S  F +LP +F P   ++  +  +  Y D S     +I H +   S       R  +V  
Sbjct: 185 SNEFSSLPFSFMPAKANVNDLFNISAYVDTSDLPILFIKHPNNGTSFFSNSLNRDSIVEF 244

Query: 381 VENSL 395
           +++S+
Sbjct: 245 LQSSI 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,622,961
Number of Sequences: 5004
Number of extensions: 82692
Number of successful extensions: 230
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)