Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00799
(771 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 36 0.042
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ... 33 0.17
AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical ... 32 0.39
U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical pr... 32 0.52
AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans nonsense-medi... 31 1.2
AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor wi... 31 1.2
AC090999-1|AAK26146.1| 390|Caenorhabditis elegans Hypothetical ... 30 2.1
U61947-14|ABA29341.1| 413|Caenorhabditis elegans Nuclear hormon... 29 2.8
U61947-13|AAB03131.3| 429|Caenorhabditis elegans Nuclear hormon... 29 2.8
AY204189-1|AAO39193.1| 429|Caenorhabditis elegans nuclear recep... 29 2.8
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p... 29 3.7
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 29 3.7
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 29 3.7
U28943-1|AAA68356.1| 635|Caenorhabditis elegans Hypothetical pr... 29 4.8
AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical ... 29 4.8
AF068713-10|AAC17801.1| 376|Caenorhabditis elegans Serpentine r... 28 8.5
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 35.5 bits (78), Expect = 0.042
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = +1
Query: 166 DGDCSDTMTINAGVPQGSVLSPTLFILYIK 255
D S T+ GVPQGSV+SP LF Y+K
Sbjct: 520 DNHWSKWHTLLGGVPQGSVISPNLFTFYLK 549
>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
protein F21E9.1 protein.
Length = 1170
Score = 33.5 bits (73), Expect = 0.17
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +1
Query: 193 INAGVPQGSVLSPTLFILYIKTCCLLMA 276
I++GVPQGSV P LFIL+I + +A
Sbjct: 877 ISSGVPQGSVSGPLLFILFINNLLIDLA 904
>AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical
protein C44B12.7 protein.
Length = 389
Score = 32.3 bits (70), Expect = 0.39
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = +2
Query: 44 KAFDRVWHRTLLSKLPSYGIPEGLCKMIASFLDGR 148
KAFD+V H LL KL +GI C FL R
Sbjct: 2 KAFDQVNHSLLLQKLHDFGINPLFCNWFHDFLSSR 36
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +1
Query: 193 INAGVPQGSVLSPTLFILYIKTCCL 267
I++GVP+GSV P LF+++I + L
Sbjct: 53 ISSGVPKGSVSGPFLFLIFINSLLL 77
>U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical
protein F31A9.6 protein.
Length = 358
Score = 31.9 bits (69), Expect = 0.52
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +2
Query: 26 VSLDIAKAFDRVWHRTLLSKLPSYGIPEGLCKMIASFLDGRRSR 157
+ LD +KAFDR+ H LL KL S + L + FL R R
Sbjct: 17 IYLDFSKAFDRLPHDLLLDKLVSLRKNKNLLIWVNEFLSNRSFR 60
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = +1
Query: 202 GVPQGSVLSPTLFILYI 252
GVPQG+VLSP LF +Y+
Sbjct: 76 GVPQGAVLSPLLFGIYV 92
>AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans
nonsense-mediated mRNA decay trans-acting factor
protein.
Length = 1069
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +2
Query: 467 HCEEGP--LCHGAAIPGVSLQPSESIGILGV-DISSDVQFRSH 586
HC+ GP +C AAI G+S E + +LG+ VQ+R H
Sbjct: 637 HCQLGPVVICKKAAIAGLSQSLFERLVLLGIRPFRLQVQYRMH 679
>AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 2 protein.
Length = 1069
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +2
Query: 467 HCEEGP--LCHGAAIPGVSLQPSESIGILGV-DISSDVQFRSH 586
HC+ GP +C AAI G+S E + +LG+ VQ+R H
Sbjct: 637 HCQLGPVVICKKAAIAGLSQSLFERLVLLGIRPFRLQVQYRMH 679
>AC090999-1|AAK26146.1| 390|Caenorhabditis elegans Hypothetical
protein Y82E9BR.8 protein.
Length = 390
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -2
Query: 239 KSVGESTEPCGTPALMVMVSEQ 174
KS GE T+PCGTP + SE+
Sbjct: 57 KSTGERTDPCGTPHTAFLGSEK 78
>U61947-14|ABA29341.1| 413|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 105, isoform b protein.
Length = 413
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -1
Query: 414 PIRRLAPESSPLQTQVLIVSLAPRSERDSDGRYIA 310
P+RRL P+S + T ++ L P R+ DG Y++
Sbjct: 295 PLRRLKPDSVEVATVKTLMLLKPTCLREIDGDYLS 329
>U61947-13|AAB03131.3| 429|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 105, isoform a protein.
Length = 429
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -1
Query: 414 PIRRLAPESSPLQTQVLIVSLAPRSERDSDGRYIA 310
P+RRL P+S + T ++ L P R+ DG Y++
Sbjct: 311 PLRRLKPDSVEVATVKTLMLLKPTCLREIDGDYLS 345
>AY204189-1|AAO39193.1| 429|Caenorhabditis elegans nuclear receptor
NHR-105 protein.
Length = 429
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -1
Query: 414 PIRRLAPESSPLQTQVLIVSLAPRSERDSDGRYIA 310
P+RRL P+S + T ++ L P R+ DG Y++
Sbjct: 311 PLRRLKPDSVEVATVKTLMLLKPTCLREIDGDYLS 345
>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical protein
K08E5.3b protein.
Length = 3183
Score = 29.1 bits (62), Expect = 3.7
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 300 CYHLHSNACHQ*TACLDIQD 241
C + H N CHQ AC+D+++
Sbjct: 1582 CQYPHLNDCHQNAACIDLEE 1601
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
K08E5.3a protein.
Length = 3767
Score = 29.1 bits (62), Expect = 3.7
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 300 CYHLHSNACHQ*TACLDIQD 241
C + H N CHQ AC+D+++
Sbjct: 2166 CQYPHLNDCHQNAACIDLEE 2185
>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 29.1 bits (62), Expect = 3.7
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 300 CYHLHSNACHQ*TACLDIQD 241
C + H N CHQ AC+D+++
Sbjct: 1582 CQYPHLNDCHQNAACIDLEE 1601
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 29.1 bits (62), Expect = 3.7
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 300 CYHLHSNACHQ*TACLDIQD 241
C + H N CHQ AC+D+++
Sbjct: 2166 CQYPHLNDCHQNAACIDLEE 2185
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 29.1 bits (62), Expect = 3.7
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 300 CYHLHSNACHQ*TACLDIQD 241
C + H N CHQ AC+D+++
Sbjct: 2166 CQYPHLNDCHQNAACIDLEE 2185
>U28943-1|AAA68356.1| 635|Caenorhabditis elegans Hypothetical
protein E04F6.4 protein.
Length = 635
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 26 VSLDIAKAFDRVWHRTLLSKLPSYGIPEGLCKMIA 130
++ I F+R WH T KL YG +G I+
Sbjct: 556 INRQIKAVFERYWHSTYSQKLQKYGESKGYLPKIS 590
>AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical
protein Y32G9A.9 protein.
Length = 417
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +1
Query: 184 TMTINAGVPQGSVLSPTLFILYIKTCCLLMACIAMQMIARGMRDISAIRVS 336
T+ + GV QG +SP LF ++ ++CI + A I +RV+
Sbjct: 92 TVPVTKGVRQGDPISPNLFSACLEHVFRKLSCIEFKGEAEDYNTIPGMRVN 142
>AF068713-10|AAC17801.1| 376|Caenorhabditis elegans Serpentine
receptor, class w protein130 protein.
Length = 376
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -1
Query: 690 DLCFIKQKSLSRREAPSLC 634
DLCFIK + +RR +P LC
Sbjct: 116 DLCFIKLRDFARRCSPWLC 134
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,371,062
Number of Sequences: 27780
Number of extensions: 484691
Number of successful extensions: 1214
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1213
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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