Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00799
         (771 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    26   0.34 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    26   0.34 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   5.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   5.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.6  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 26.2 bits (55), Expect = 0.34
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -2

Query: 527 KVAGILLELRRHDKGVLLRSERANLCLYRVELNQVQFTPFGDSPQR--VLHFR 375
           K+ G+   +  +D+GV  ++   N+       ++V+F   GD   R  +L+FR
Sbjct: 354 KLKGLCPSMANYDRGVFYKNYLLNVSFIDAAGSEVKFDEHGDGLARYEILNFR 406


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 26.2 bits (55), Expect = 0.34
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -2

Query: 527 KVAGILLELRRHDKGVLLRSERANLCLYRVELNQVQFTPFGDSPQR--VLHFR 375
           K+ G+   +  +D+GV  ++   N+       ++V+F   GD   R  +L+FR
Sbjct: 444 KLKGLCPSMANYDRGVFYKNYLLNVSFIDAAGSEVKFDEHGDGLARYEILNFR 496


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 613 QNAGSPLTERRCFTPGQRL 669
           +  G+P   R C TP +RL
Sbjct: 137 RTCGNPWNTRYCLTPTERL 155



 Score = 22.2 bits (45), Expect = 5.5
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -3

Query: 691 GLVLYKAKVFVQA*STFALLRDSQHFGRQLGFAFQMTPKL 572
           G V+Y   +F  A  T  L+R     G   G  + +TP L
Sbjct: 232 GKVVYFTSLFPYALLTILLIRGLTLPGAMEGLKYYVTPNL 271


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 613 QNAGSPLTERRCFTPGQRL 669
           +  G+P   R C TP +RL
Sbjct: 190 RTCGNPWNTRYCLTPTERL 208



 Score = 22.2 bits (45), Expect = 5.5
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -3

Query: 691 GLVLYKAKVFVQA*STFALLRDSQHFGRQLGFAFQMTPKL 572
           G V+Y   +F  A  T  L+R     G   G  + +TP L
Sbjct: 285 GKVVYFTSLFPYALLTILLIRGLTLPGAMEGLKYYVTPNL 324


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 351 QERRSKLVSEVENSLGRVSEW 413
           QER S+LV  +EN    V  W
Sbjct: 465 QERESELVPYLENKGNGVYAW 485


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,186
Number of Sequences: 438
Number of extensions: 5343
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)