Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00799
         (771 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g36470.1 68415.m04476 expressed protein                             30   1.9  
At2g47510.1 68415.m05930 fumarate hydratase, putative / fumarase...    29   2.6  
At5g37010.1 68418.m04438 expressed protein                             29   3.4  
At1g63710.1 68414.m07210 cytochrome P450, putative similar to cy...    29   3.4  
At5g57580.1 68418.m07194 calmodulin-binding protein similar to c...    29   4.5  
At4g06744.1 68417.m01106 leucine-rich repeat family protein / ex...    29   4.5  
At3g29200.1 68416.m03662 chorismate mutase, chloroplast (CM1) id...    29   4.5  
At5g60960.1 68418.m07647 pentatricopeptide (PPR) repeat-containi...    28   5.9  
At1g43720.1 68414.m05023 hypothetical protein                          28   5.9  
At1g59700.1 68414.m06716 glutathione S-transferase, putative sim...    28   7.9  
At1g59670.1 68414.m06711 glutathione S-transferase, putative sim...    28   7.9  

>At2g36470.1 68415.m04476 expressed protein
          Length = 327

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = -2

Query: 173 SPSTTTVISAHPKS*RSSCRDPRGFRKMVTS 81
           S + T VIS  PKS   S R P+G RK+ +S
Sbjct: 63  SDNLTVVISTPPKSYSVSLRKPKGSRKLTSS 93


>At2g47510.1 68415.m05930 fumarate hydratase, putative / fumarase,
           putative similar to SP|P55250 Fumarate hydratase,
           mitochondrial precursor (EC 4.2.1.2) (Fumarase)
           {Rhizopus oryzae}; contains Pfam profile PF00206: Lyase
          Length = 492

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
 Frame = +1

Query: 481 TPLSWRRNSRSIPATFREYRDTWG*HFERCPVSESFGRQSQVGVQNAGSPLTERRCFTPG 660
           T L +  + RS   +FRE RDT+G    + P  + +G Q+Q  +QN        R   P 
Sbjct: 17  TALRYATSLRSYSTSFREERDTFG--PIQVPSDKLWGAQTQRSLQNFEIGGERERMPEPI 74

Query: 661 QRL--LLYKAQVRPRMEY 708
            R   +L K   +  MEY
Sbjct: 75  VRAFGVLKKCAAKVNMEY 92


>At5g37010.1 68418.m04438 expressed protein
          Length = 637

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 22/67 (32%), Positives = 34/67 (50%)
 Frame = +1

Query: 463 RSLRRRTPLSWRRNSRSIPATFREYRDTWG*HFERCPVSESFGRQSQVGVQNAGSPLTER 642
           R  RRRTP   R +S+S  +  RE R + G       VS S GR+S++   ++G+ +   
Sbjct: 178 RERRRRTPSRERDDSKSNRSGSRE-RGSSGNGGGSRRVSRSPGRRSEINPNSSGNSVNSS 236

Query: 643 RCFTPGQ 663
               PG+
Sbjct: 237 NNNRPGK 243


>At1g63710.1 68414.m07210 cytochrome P450, putative similar to
           cytochrome P450 GB:O23066 [Arabidopsis thaliana]
          Length = 523

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/62 (29%), Positives = 34/62 (54%)
 Frame = +3

Query: 327 QSLSRSVVQERRSKLVSEVENSLGRVSEWGELNLVQFNPIKTQVCAFTAKKDPFVMAPQF 506
           Q+++R V +  +++LV  +E++  R +E  +L  V        +C  T  KDP  ++P+F
Sbjct: 145 QAMARWVDRAIKNRLVPILESARSR-AEPIDLQDVLLRLTFDNICGLTFGKDPRTLSPEF 203

Query: 507 QE 512
            E
Sbjct: 204 PE 205


>At5g57580.1 68418.m07194 calmodulin-binding protein similar to
           calmodulin-binding protein TCB60 GI:1698548 from
           [Nicotiana tabacum]
          Length = 647

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
 Frame = -1

Query: 417 HPIRRLAPESS---PLQTQVLIVSLAPRSERDSDGRYIAHPSCYHLHSNACHQ*TACLDI 247
           HP++ +A  SS   P Q+ VL        ++    RY +HP   + +  A  +  +C   
Sbjct: 417 HPMQMVAGHSSSMPPNQSPVLSDFAIGGYDQTLATRYHSHPQLLNSNPRAQFEVASCSTS 476

Query: 246 QDEKRGGEHRT 214
           QD+  G  H+T
Sbjct: 477 QDQFMGNLHQT 487


>At4g06744.1 68417.m01106 leucine-rich repeat family protein /
           extensin family protein similar to leucine-rich
           repeat/extensin 1 (GI:13809918) {Arabidopsis thaliana};
           contains Pfam PF00560: Leucine Rich Repeat domains
          Length = 404

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +1

Query: 649 FTPGQRLLLYKAQ--VRPRMEYCSHLW 723
           F PGQR +   A+  V+P+  YC H+W
Sbjct: 350 FFPGQRSMQECAEFFVKPKKYYCPHMW 376


>At3g29200.1 68416.m03662 chorismate mutase, chloroplast (CM1)
           identical to chorismate mutase GB:Z26519 [SP|P42738]
           [Arabidopsis thaliana]
          Length = 340

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 125 IASFLDGRRSRSL*T-VTVLIP*PLTLAFHKVRCSPPR 235
           I  F D RR  S  T ++ L+P P T +   VRCS P+
Sbjct: 16  IGGFFDHRRELSTSTPISTLLPLPSTKSSFSVRCSLPQ 53


>At5g60960.1 68418.m07647 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 521

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +3

Query: 372 VSEVENSLGRVSEWG-ELNLVQFNPIKTQVCAFTAKKDPFVMAPQFQE 512
           + E     G +S  G E+    +N +   VC    KKDPF + P+ ++
Sbjct: 261 LDEATRLAGEMSRGGFEIGTKAYNMMLDCVCKLCRKKDPFKLQPEVEK 308


>At1g43720.1 68414.m05023 hypothetical protein 
          Length = 314

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 277 CIAMQMIARGMRDISAIRVSLGAWCKRDDQNLCLKWRTLW 396
           C  + +I +G   ++A R  L  W KR+D N C  W   W
Sbjct: 268 CSTVGIITKGST-MAANRKILTRWFKRNDSNKCSIWIFSW 306


>At1g59700.1 68414.m06716 glutathione S-transferase, putative
           similar to glutathione S-transferase GB:AAF29773
           GI:6856103 from [Gossypium hirsutum]
          Length = 234

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 29  SLDIAKAFDRVWHRTLLSKLPSYGIPEGLCKMIASFLDGR 148
           SL+I +  D  W+ +  S LPS+     L +  + F+D +
Sbjct: 70  SLNIVEYIDETWNSSAPSILPSHPYDRALARFWSDFVDNK 109


>At1g59670.1 68414.m06711 glutathione S-transferase, putative
           similar to glutathione S-transferase GB:AAF29773
           GI:6856103 from [Gossypium hirsutum]
          Length = 233

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 20  LAVSLDIAKAFDRVWHRTLLSKLPSYGIPEGLCKMIASFLDGR 148
           + VSL+I +  D  W+ +  S LPS+     L +  + F+D +
Sbjct: 67  VCVSLNIVEYIDETWNSSGSSILPSHPYDRALARFWSVFVDDK 109


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,610,836
Number of Sequences: 28952
Number of extensions: 461714
Number of successful extensions: 1296
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1296
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)