Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00798
         (749 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9SST0 Cluster: Putative uncharacterized protein AT4g09...    35   1.9  
UniRef50_Q83944 Cluster: 2a protein; n=1; Olive latent virus 2|R...    33   5.7  

>UniRef50_Q9SST0 Cluster: Putative uncharacterized protein
           AT4g09640; n=2; Arabidopsis thaliana|Rep: Putative
           uncharacterized protein AT4g09640 - Arabidopsis thaliana
           (Mouse-ear cress)
          Length = 339

 Score = 35.1 bits (77), Expect = 1.9
 Identities = 20/71 (28%), Positives = 32/71 (45%)
 Frame = -3

Query: 675 WWCHPCTLTRGPITNNYVNYNFAGLIFIT*CYSFTMEVNCEHLISTHFIRIIGTRLDPNT 496
           WW    T+  G I N +  Y FA  I +T   + ++ + CE     H   I+G  L    
Sbjct: 67  WWIGMITMIVGEIAN-FAAYAFAPAILVTPLGALSIIIRCEQTQKLHTFGILGCALCIVG 125

Query: 495 SALLNMNAPDD 463
           S  + ++AP +
Sbjct: 126 SVTIVLHAPQE 136


>UniRef50_Q83944 Cluster: 2a protein; n=1; Olive latent virus 2|Rep:
           2a protein - Olive latent virus 2
          Length = 787

 Score = 33.5 bits (73), Expect = 5.7
 Identities = 15/60 (25%), Positives = 22/60 (36%)
 Frame = +1

Query: 478 HVEQCTGVRIQAGTNYSNEMRTYQMFTIDFHGEGITSCNKNQTCKVIIYIIIGDRTSCEC 657
           H E C G  +  G   S    +Y   ++   G G+      + C    Y +   R SC C
Sbjct: 65  HAECCEGPLMNKGLTLSTYFMSYPGISLPAFGGGVIHVTSARVCMQAFYAVTPGRCSCSC 124


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 656,706,800
Number of Sequences: 1657284
Number of extensions: 12527334
Number of successful extensions: 28065
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 27191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28055
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61734884250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)