Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00798
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce...    27   3.8  
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c...    26   5.0  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    26   5.0  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   5.0  
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c...    26   6.6  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   6.6  

>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 642

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 268 VLEQQASALKKRKIEQLSQKIDIIVAGKKKNLINKGMS 381
           V ++  S  K+ K+ +L +K+D     KKKN  + G S
Sbjct: 12  VKKKDGSMNKRVKVAKLPKKVDSFSPKKKKNTTSSGSS 49


>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 505 IQAGTNYSNEMRTYQMFTIDFHGEGITSCNKNQTCKV 615
           I A T  +N        T DF+G  + SC+ +Q  KV
Sbjct: 4   ISATTIQTNHQDLVNDVTYDFYGRRMVSCSADQRVKV 40


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 344 ATMISIFCDNCSILRFFNADACCSSTL 264
           A++  I+C  C+ L FFNAD   +S L
Sbjct: 125 ASLKVIYCLFCNKLEFFNADMNAASVL 151


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 452 GHCKPIIYIMTISEATFHKSIYLPD 378
           G+ K +IY  T+   +F +  YLPD
Sbjct: 160 GNFKQVIYSPTVYNGSFKRLFYLPD 184


>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 392

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = -1

Query: 443 KPIIYIMTISEATF--HKSIYLPDI 375
           KP+IY++ +SE  F   K+ YLP I
Sbjct: 225 KPVIYLVNMSERDFLRQKNKYLPKI 249


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 93  ICNIKLCYFFKNSSINSLSFSV 28
           +CNI   Y +K+ + NSL+ S+
Sbjct: 930 VCNISKLYVYKSDATNSLASSI 951


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,790,225
Number of Sequences: 5004
Number of extensions: 54906
Number of successful extensions: 129
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)