Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00798
         (749 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    24   1.3  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    24   1.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.3  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    23   2.3  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    23   3.1  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   9.3  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +1

Query: 337 IVAGKKKNLINKGMSGR*MLLWNVASDIVII*IIGLQWPKG*VV-WCVHVEQCTGVRIQA 513
           ++A  + N+I KG+SG+ + +      I+ I +  L W    +  W  +V +  G     
Sbjct: 145 MIAFDRYNVIVKGLSGKPLSINGALIRIIAIWLFSLGWTIAPMFGWNRYVPE--GNMTAC 202

Query: 514 GTNYSN 531
           GT+Y N
Sbjct: 203 GTDYFN 208


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +1

Query: 337 IVAGKKKNLINKGMSGR*MLLWNVASDIVII*IIGLQWPKG*VV-WCVHVEQCTGVRIQA 513
           ++A  + N+I KG+SG+ + +      I+ I +  L W    +  W  +V +  G     
Sbjct: 21  MIAFDRYNVIVKGLSGKPLSINGALIRIIAIWLFSLGWTIAPMFGWNRYVPE--GNMTAC 78

Query: 514 GTNYSN 531
           GT+Y N
Sbjct: 79  GTDYFN 84


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 561 NCEHLISTHFIRIIGTRLDPNTS 493
           NC+  I+ HF     +RL+P T+
Sbjct: 221 NCDQRINYHFGMTDNSRLEPGTN 243


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +2

Query: 227 NAFQHLNRMFFVIEY*N 277
           + FQ ++R++FV+EY N
Sbjct: 52  SCFQTMDRLYFVMEYVN 68


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +1

Query: 337 IVAGKKKNLINKGMSGR*MLLWNVASDIVII*IIGLQW 450
           ++A  + N+I KG+SG+ + +      I+ I +  L W
Sbjct: 111 MIAFDRYNVIVKGLSGKPLSINGALIRIIAIWLFSLGW 148


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -3

Query: 384 TRHPFIYEVFLFPSHNDIN 328
           T+H  + + F+FP  N+ N
Sbjct: 121 TKHQKLDQKFIFPQENNYN 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,795
Number of Sequences: 438
Number of extensions: 4419
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)