Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00797
         (830 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    23   3.0  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     22   5.2  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    22   5.2  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           22   5.2  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    22   5.2  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   9.1  

>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +1

Query: 280 ATNKLRVGSSLHTQVFHVPYEERKLDNANTFG 375
           +T+   VG+ +H Q  H  Y    + ++ TFG
Sbjct: 187 STSSQPVGTQIHQQTNHTFYPWMAIADSMTFG 218


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
 Frame = -2

Query: 166 HGYIRMNGYH--ISNHHGLLMHH 104
           +GY   N YH  + +HHG  +HH
Sbjct: 77  NGYGYGNYYHPQLHSHHGPPIHH 99


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
 Frame = -2

Query: 166 HGYIRMNGYH--ISNHHGLLMHH 104
           +GY   N YH  + +HHG  +HH
Sbjct: 77  NGYGYGNYYHPQLHSHHGPPIHH 99


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
 Frame = -2

Query: 166 HGYIRMNGYH--ISNHHGLLMHH 104
           +GY   N YH  + +HHG  +HH
Sbjct: 77  NGYGYGNYYHPQLHSHHGPPIHH 99


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
 Frame = -2

Query: 166 HGYIRMNGYH--ISNHHGLLMHH 104
           +GY   N YH  + +HHG  +HH
Sbjct: 77  NGYGYGNYYHPQLHSHHGPPIHH 99


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 289  KLRVGSSLHTQVFHVPYEERKLDNANTFGEGES 387
            KL +G  ++ Q F +    +   NA T+G GE+
Sbjct: 2060 KLVMGMPMYGQSFSLADNNQNGLNAATYGGGEA 2092


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,907
Number of Sequences: 336
Number of extensions: 4126
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22829180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)