Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00797
(830 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 38 0.002
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 32 0.11
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 27 4.3
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 4.3
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S... 27 4.3
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 26 7.5
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 25 10.0
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 25 10.0
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 37.9 bits (84), Expect = 0.002
Identities = 13/50 (26%), Positives = 30/50 (60%)
Frame = +3
Query: 510 QILTHFQQQASKQISIPKEHYRWILGKQGQKLKELEKVTATKINVPGISD 659
+I+ + Q ++I +P+ I+G+ G +++E+ T+T +N+P + D
Sbjct: 1030 EIVEELKNQVEEKIEVPQRCISSIIGRMGSTRRDIERKTSTMLNIPNVLD 1079
Score = 31.9 bits (69), Expect = 0.11
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +1
Query: 403 SITKDTGAHIEIST-SKDGSLTFLITGKQSAVLEARHKF*PIFSNRPVNKSQSLRSIIVG 579
++ T I +ST SK + TFLI GK SAV AR + + R K+ +VG
Sbjct: 179 TVMHQTSTRINVSTASKTKNTTFLIQGKTSAVKAARRQILKLIGRRE-TKTMPCPVFVVG 237
Query: 580 S 582
+
Sbjct: 238 A 238
Score = 29.1 bits (62), Expect = 0.81
Identities = 13/54 (24%), Positives = 25/54 (46%)
Frame = +3
Query: 486 ERCSRSAAQILTHFQQQASKQISIPKEHYRWILGKQGQKLKELEKVTATKINVP 647
E+ S + + + + IP +R I+G G + ++ K+ KI+VP
Sbjct: 1191 EKAIASLEKSIKQVMENCIAYLGIPTNLHRRIIGSGGSIINKIRKIAQVKIDVP 1244
Score = 28.7 bits (61), Expect = 1.1
Identities = 17/63 (26%), Positives = 28/63 (44%)
Frame = +3
Query: 459 SNFPYHWKAERCSRSAAQILTHFQQQASKQISIPKEHYRWILGKQGQKLKELEKVTATKI 638
+ F K + QIL ++ +K + P I+G GQ LK + T+T+I
Sbjct: 199 TTFLIQGKTSAVKAARRQILKLIGRRETKTMPCPVFVVGAIIGTNGQNLKSIMDRTSTRI 258
Query: 639 NVP 647
+P
Sbjct: 259 QIP 261
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 31.9 bits (69), Expect = 0.11
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +3
Query: 528 QQQASKQISIPKEHYRWILGKQGQKLKELEKVTATKINV 644
Q + ++ ISIP + I+G+ G K+ E+ + + +KI++
Sbjct: 318 QPKVTQNISIPADMVGCIIGRGGSKISEIRRTSGSKISI 356
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 26.6 bits (56), Expect = 4.3
Identities = 8/20 (40%), Positives = 16/20 (80%)
Frame = +3
Query: 573 RWILGKQGQKLKELEKVTAT 632
+W+ KQ Q++KE++ +T+T
Sbjct: 657 KWVFNKQDQEVKEIKALTST 676
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect = 4.3
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -1
Query: 173 QHAWVHQDERVSHLQPSWIADASFLSPPAVLVR 75
Q+ W D R HL PSW+ + PP ++ +
Sbjct: 947 QYLWFEADRR--HLFPSWVKPSDSEPPPLLVYK 977
>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
Klp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 26.6 bits (56), Expect = 4.3
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +1
Query: 328 HVPYEERKLDNANTFGEGESLRTC 399
HVPY + KL F G + RTC
Sbjct: 338 HVPYRDSKLTRLLKFSLGGNCRTC 361
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +2
Query: 104 MMHQQSMMVGDVIPVHPDVPMHVEEMNNVGYENNVSFAYDDL 229
++H + G I V P++P H+ + N + NN+ Y +L
Sbjct: 1396 ILHGAGALAGPTIEVDPEIPDHLIKTWNTTW-NNLFIYYPEL 1436
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 25.4 bits (53), Expect = 10.0
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Frame = +3
Query: 384 ILKNLPFHN*GY---RSAHRNIYQQRWQSNFPYHWKAERCSRSAAQILTHFQQQASKQIS 554
+LKNL Y + + +N++ Q + H + SRS++ + + + S +
Sbjct: 645 LLKNLEDSTARYEHLQKSFKNVFNQLRKQQPSNHGRNSSVSRSSSSVEVNSKHPGSDDML 704
Query: 555 IPKEHYRWIL 584
I KE+ R IL
Sbjct: 705 IDKEYTRNIL 714
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 25.4 bits (53), Expect = 10.0
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 423 SAHRNIYQQRWQSNFPYHWKAERCSRSAAQILTHFQQQASKQI 551
+AHR ++QQ SNF Y + S+ + + + QQ +K I
Sbjct: 837 NAHRPLFQQVLLSNFMYSYLDLISRISSNRPMNNVQQSTAKPI 879
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,321,012
Number of Sequences: 5004
Number of extensions: 67528
Number of successful extensions: 188
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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