Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00797
         (830 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0376 + 22896481-22896972                                         31   1.1  
02_01_0311 - 2075881-2076165,2076450-2076519,2076628-2076691,207...    29   3.4  
09_04_0618 + 18988614-18989102,18989913-18990314,18990555-189908...    29   4.5  
01_06_1526 + 38003071-38003247,38003338-38003690,38004489-38004987     29   4.5  
03_06_0654 - 35307122-35307205,35307381-35307444,35307486-353075...    28   7.9  

>11_06_0376 + 22896481-22896972
          Length = 163

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 540 SKQISIPKEHYRWILGKQGQKLKELEKVTATK 635
           SKQ+ +P+EH  WIL ++     E +K  A +
Sbjct: 8   SKQLRMPQEHISWILHRREPSFDEADKAAARR 39


>02_01_0311 -
           2075881-2076165,2076450-2076519,2076628-2076691,
           2076798-2076837,2076930-2077006,2077095-2077311,
           2077482-2078132
          Length = 467

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = -1

Query: 431 MCAPVSLVMEWQVLKDSPSPKVLALSSFRSSYGT 330
           M  PVS   + + L+D+ SP  + LSS RSS GT
Sbjct: 227 MSLPVSSCSDQEDLQDARSPAKVQLSSSRSSSGT 260


>09_04_0618 +
           18988614-18989102,18989913-18990314,18990555-18990806,
           18991564-18991941,18992350-18992426,18992700-18992808,
           18993424-18993574,18993810-18993903,18997072-18997474,
           18997590-18997742,18998115-18998474
          Length = 955

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 546 QISIPKEHYRWILGKQGQKLKELEKVTATKINVPG 650
           ++ +P +H   +LGK G  + E+ K+T   I + G
Sbjct: 331 RLLVPSQHIGCLLGKGGSIIAEMRKITGAGIRIFG 365


>01_06_1526 + 38003071-38003247,38003338-38003690,38004489-38004987
          Length = 342

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 19/60 (31%), Positives = 30/60 (50%)
 Frame = -1

Query: 416 SLVMEWQVLKDSPSPKVLALSSFRSSYGTWKT*VCSEEPTRSLFVACCILRCTRAGNAAM 237
           SLV +W   K  PS K  A + F++    ++  +  ++  R++F  CC     RAG  AM
Sbjct: 29  SLVKKWHPDKHPPSSKPEAEARFKAITEAYEA-LLDQQENRAVFGVCC--NDGRAGEKAM 85


>03_06_0654 -
           35307122-35307205,35307381-35307444,35307486-35307536,
           35307881-35307993,35308083-35308164,35308621-35308741,
           35308821-35308980,35309335-35309396,35309548-35309707,
           35309794-35310021
          Length = 374

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 25/67 (37%), Positives = 32/67 (47%)
 Frame = +1

Query: 226 PISSIAAFPALVQRNIQQATNKLRVGSSLHTQVFHVPYEERKLDNANTFGEGESLRTCHS 405
           P+ S A +    +R IQ  T  L VGSS+  +V  V  EERKL     F E ++    HS
Sbjct: 120 PLLSPAHWCKDPKRPIQDVTKDL-VGSSISVKVVEVNEEERKL----VFSEKDASWFTHS 174

Query: 406 ITKDTGA 426
                GA
Sbjct: 175 SLVKIGA 181


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,400,798
Number of Sequences: 37544
Number of extensions: 430507
Number of successful extensions: 1107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1107
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)