Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00797
(830 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21167| Best HMM Match : KH_1 (HMM E-Value=0) 63 2e-10
SB_12148| Best HMM Match : DUF827 (HMM E-Value=0.044) 35 0.093
SB_24937| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.16
SB_19761| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.66
SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_33399| Best HMM Match : Ank (HMM E-Value=0) 30 2.6
SB_18495| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_25863| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
>SB_21167| Best HMM Match : KH_1 (HMM E-Value=0)
Length = 1650
Score = 63.3 bits (147), Expect = 2e-10
Identities = 33/94 (35%), Positives = 54/94 (57%)
Frame = +3
Query: 480 KAERCSRSAAQILTHFQQQASKQISIPKEHYRWILGKQGQKLKELEKVTATKINVPGISD 659
K + +++ +L+ Q QA +I IP+EH+++ILGK G+ L+ +E TATKI +P D
Sbjct: 176 KPDTVAKARRLVLSQLQTQAQIEIQIPREHHKFILGKGGKTLQTMELSTATKITMP--RD 233
Query: 660 NSXXXXXXXXXXXXXXAEHEIRVCSEEQSRKALE 761
S A HEI++ S++Q++ A E
Sbjct: 234 GSDTIKIIGTKEGVDRARHEIQLISDQQAKLAFE 267
Score = 61.3 bits (142), Expect = 9e-10
Identities = 34/72 (47%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Frame = +1
Query: 298 VGSSLHTQVFHVPYEER--KLDNANTFGEGESLRTCHSITKDTGAHIEISTSKDGSLTFL 471
+ S+ TQVF VP EER KL + TFG+ C I TGA IE+S KD SLT +
Sbjct: 113 IRSTTVTQVFRVPLEERRYKLFHEATFGDERQHSICRDIMAKTGASIEVSLGKDLSLTIM 172
Query: 472 ITGKQSAVLEAR 507
+TGK V +AR
Sbjct: 173 VTGKPDTVAKAR 184
Score = 31.1 bits (67), Expect = 1.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 755 FRTVVVPKIYHPFIQGPYGERA 820
F + +PK +HPFI GP E A
Sbjct: 266 FERLAIPKTFHPFISGPNNETA 287
Score = 30.3 bits (65), Expect = 2.0
Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Frame = +3
Query: 495 SRSAAQILTHFQQQ-ASKQISIPKEHYRWILGKQGQKLKELEKVTATKINVPGISDNSXX 671
+R Q+++ Q + A ++++IPK + +I G + +++ T IN+P S N
Sbjct: 250 ARHEIQLISDQQAKLAFERLAIPKTFHPFISGPNNETANRIKEQTGAAINIPPPSVNKDE 309
Query: 672 XXXXXXXXXXXXAEHEIRVCSEEQSRKALELS 767
A+ I E++ RK +S
Sbjct: 310 LTVAGEKDGVAQAKAMILEIYEDKKRKTTTVS 341
>SB_12148| Best HMM Match : DUF827 (HMM E-Value=0.044)
Length = 933
Score = 34.7 bits (76), Expect = 0.093
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +2
Query: 170 VEEMNNVGYENNVSFAYDDLFPALPHSQPLCNVIYNRLQTNFEL 301
++ + + + V FA D +FP LP +QP+ NR T FEL
Sbjct: 731 IKNFHCISCDKPVEFARDGMFPPLPSAQPMPGKKSNRPYTTFEL 774
>SB_24937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 589
Score = 33.9 bits (74), Expect = 0.16
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 540 SKQISIPKEHYRWILGKQGQKLKELEKVTATKINVP 647
S QI I +H+ +I+GK G +K + + T +N P
Sbjct: 471 SMQIDIAPQHHLFIIGKNGANIKHITQQTGASVNFP 506
>SB_19761| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 31.9 bits (69), Expect = 0.66
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +1
Query: 322 VFHVPYEERKLDNANTFGEGESLRTCHSITKDTGAHIEISTSKDGSLTF 468
VF V + E++ N+ TFG+ R C KD+ A TSK LT+
Sbjct: 33 VFSVKFHEKR-SNSTTFGQIPPSRQCTDAMKDSLASALRHTSKQAQLTY 80
>SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 655
Score = 30.3 bits (65), Expect = 2.0
Identities = 12/58 (20%), Positives = 29/58 (50%)
Frame = +3
Query: 489 RCSRSAAQILTHFQQQASKQISIPKEHYRWILGKQGQKLKELEKVTATKINVPGISDN 662
RC R ++T + +I +P++ +++GK G+ +K ++ + ++ DN
Sbjct: 198 RCQRGK-DLVTDLLTEKELEIPVPRDVVGFVIGKGGETIKRIQAESGARVQFNPAKDN 254
>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
Length = 1416
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = +1
Query: 400 HSITKDTGAHIEISTSKD---GSLTFLITGKQSAVLEARH 510
++I + TGAHI+I TS+ GS I G A +A H
Sbjct: 933 NAIRETTGAHIDIDTSRQKSTGSCIITIKGPADATRQAHH 972
>SB_18495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 29.5 bits (63), Expect = 3.5
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -2
Query: 130 NHHGLLMHHFCLLRQSLSAPSRYSTKVLYQIKLKDYAVDARIV 2
NH L+ HFCL+ SL S+ + + + + D +++ +IV
Sbjct: 163 NHAEKLLQHFCLMFSSLYPASKETINIHSLVNICDDSIELQIV 205
>SB_25863| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 813
Score = 29.1 bits (62), Expect = 4.6
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +3
Query: 549 ISIPKEHYRWILGKQGQKLKELEKVTAT 632
+ IP+ R ++GK GQ++K+L++ T T
Sbjct: 465 VFIPEHLARHVIGKHGQRIKDLKQKTKT 492
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,922,549
Number of Sequences: 59808
Number of extensions: 506479
Number of successful extensions: 1182
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1180
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2335516755
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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