Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00797
(830 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M64098-1|AAA35962.1| 1268|Homo sapiens high density lipoprotein ... 82 3e-15
BC001179-1|AAH01179.1| 1268|Homo sapiens high density lipoprotei... 82 3e-15
AC104841-2|AAY14717.1| 1268|Homo sapiens unknown protein. 82 3e-15
BC014305-1|AAH14305.2| 898|Homo sapiens HDLBP protein protein. 36 0.18
AK131375-1|BAD18526.1| 577|Homo sapiens protein ( Homo sapiens ... 36 0.18
AK127833-1|BAC87153.1| 847|Homo sapiens protein ( Homo sapiens ... 36 0.18
AL589765-14|CAI17175.1| 516|Homo sapiens tudor and KH domain co... 33 1.7
AL589765-13|CAI17177.1| 561|Homo sapiens tudor and KH domain co... 33 1.7
AF227192-1|AAF36701.1| 561|Homo sapiens tudor and KH domain-con... 33 1.7
AF119121-1|AAD30971.1| 606|Homo sapiens putative RNA binding pr... 33 1.7
BC001962-1|AAH01962.1| 496|Homo sapiens exonuclease 3'-5' domai... 32 2.9
AK001600-1|BAA91781.1| 496|Homo sapiens protein ( Homo sapiens ... 32 2.9
BC021290-1|AAH21290.1| 598|Homo sapiens insulin-like growth fac... 31 3.9
AF117107-1|AAD09827.1| 598|Homo sapiens IGF-II mRNA-binding pro... 31 3.9
AF057352-1|AAD31596.1| 556|Homo sapiens hepatocellular carcinom... 31 3.9
X78136-1|CAA55015.1| 365|Homo sapiens hnRNP-E2 protein. 31 6.8
DQ227344-1|ABB46294.1| 438|Homo sapiens IGF2 mRNA-binding prote... 31 6.8
BC107688-1|AAI07689.1| 335|Homo sapiens PCBP2 protein protein. 31 6.8
BC071942-1|AAH71942.1| 366|Homo sapiens poly(rC) binding protei... 31 6.8
BC001155-1|AAH01155.1| 362|Homo sapiens poly(rC) binding protei... 31 6.8
AF198254-1|AAF37203.1| 577|Homo sapiens mRNA-binding protein CR... 31 6.8
AF117106-1|AAD09826.1| 577|Homo sapiens IGF-II mRNA-binding pro... 31 6.8
AB208825-1|BAD92062.1| 373|Homo sapiens poly(rC)-binding protei... 31 6.8
AB188306-1|BAD36897.1| 331|Homo sapiens poly(rC) binding protei... 31 6.8
BC012061-1|AAH12061.1| 313|Homo sapiens PCBP3 protein protein. 30 8.9
AY780793-1|AAV98363.1| 361|Homo sapiens poly(rC) binding protei... 30 8.9
AL589765-15|CAI17176.1| 557|Homo sapiens tudor and KH domain co... 30 8.9
AK094301-1|BAC04327.1| 351|Homo sapiens protein ( Homo sapiens ... 30 8.9
AF176329-1|AAG09240.1| 339|Homo sapiens alphaCP-3 protein. 30 8.9
>M64098-1|AAA35962.1| 1268|Homo sapiens high density lipoprotein
binding protein protein.
Length = 1268
Score = 81.8 bits (193), Expect = 3e-15
Identities = 38/75 (50%), Positives = 54/75 (72%), Gaps = 1/75 (1%)
Frame = +1
Query: 286 NKLR-VGSSLHTQVFHVPYEERKLDNANTFGEGESLRTCHSITKDTGAHIEISTSKDGSL 462
NK+R + +S+ TQVFHVP EERK + N FGEGE + C I + TGAH+E+S +KD L
Sbjct: 66 NKIRPIKASVITQVFHVPLEERKYKDMNQFGEGEQAKICLEIMQRTGAHLELSLAKDQGL 125
Query: 463 TFLITGKQSAVLEAR 507
+ +++GK AV++AR
Sbjct: 126 SIMVSGKLDAVMKAR 140
Score = 73.7 bits (173), Expect = 7e-13
Identities = 35/94 (37%), Positives = 54/94 (57%)
Frame = +3
Query: 480 KAERCSRSAAQILTHFQQQASKQISIPKEHYRWILGKQGQKLKELEKVTATKINVPGISD 659
K + ++ I+ Q QAS ++IPKEH+R+++GK G+KL++LE TATKI +P D
Sbjct: 132 KLDAVMKARKDIVARLQTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDD 191
Query: 660 NSXXXXXXXXXXXXXXAEHEIRVCSEEQSRKALE 761
S A HE+ + S EQ ++A+E
Sbjct: 192 PSNQIKITGTKEGIEKARHEVLLISAEQDKRAVE 225
Score = 35.9 bits (79), Expect = 0.18
Identities = 18/64 (28%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Frame = +3
Query: 480 KAERCSRSAAQILTHFQQQASKQISIP--KEHYRWILGKQGQKLKELEKVTATKINVPGI 653
+ E+C++ +++ + S IS+P K+ ++ I+GK G +K++ + + TKI++P
Sbjct: 562 EVEKCTKYMQKMVADLVEN-SYSISVPIFKQFHKNIIGKGGANIKKIREESNTKIDLPAE 620
Query: 654 SDNS 665
+ NS
Sbjct: 621 NSNS 624
>BC001179-1|AAH01179.1| 1268|Homo sapiens high density lipoprotein
binding protein (vigilin) protein.
Length = 1268
Score = 81.8 bits (193), Expect = 3e-15
Identities = 38/75 (50%), Positives = 54/75 (72%), Gaps = 1/75 (1%)
Frame = +1
Query: 286 NKLR-VGSSLHTQVFHVPYEERKLDNANTFGEGESLRTCHSITKDTGAHIEISTSKDGSL 462
NK+R + +S+ TQVFHVP EERK + N FGEGE + C I + TGAH+E+S +KD L
Sbjct: 66 NKIRPIKASVITQVFHVPLEERKYKDMNQFGEGEQAKICLEIMQRTGAHLELSLAKDQGL 125
Query: 463 TFLITGKQSAVLEAR 507
+ +++GK AV++AR
Sbjct: 126 SIMVSGKLDAVMKAR 140
Score = 73.7 bits (173), Expect = 7e-13
Identities = 35/94 (37%), Positives = 54/94 (57%)
Frame = +3
Query: 480 KAERCSRSAAQILTHFQQQASKQISIPKEHYRWILGKQGQKLKELEKVTATKINVPGISD 659
K + ++ I+ Q QAS ++IPKEH+R+++GK G+KL++LE TATKI +P D
Sbjct: 132 KLDAVMKARKDIVARLQTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDD 191
Query: 660 NSXXXXXXXXXXXXXXAEHEIRVCSEEQSRKALE 761
S A HE+ + S EQ ++A+E
Sbjct: 192 PSNQIKITGTKEGIEKARHEVLLISAEQDKRAVE 225
Score = 35.9 bits (79), Expect = 0.18
Identities = 18/64 (28%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Frame = +3
Query: 480 KAERCSRSAAQILTHFQQQASKQISIP--KEHYRWILGKQGQKLKELEKVTATKINVPGI 653
+ E+C++ +++ + S IS+P K+ ++ I+GK G +K++ + + TKI++P
Sbjct: 562 EVEKCTKYMQKMVADLVEN-SYSISVPIFKQFHKNIIGKGGANIKKIREESNTKIDLPAE 620
Query: 654 SDNS 665
+ NS
Sbjct: 621 NSNS 624
>AC104841-2|AAY14717.1| 1268|Homo sapiens unknown protein.
Length = 1268
Score = 81.8 bits (193), Expect = 3e-15
Identities = 38/75 (50%), Positives = 54/75 (72%), Gaps = 1/75 (1%)
Frame = +1
Query: 286 NKLR-VGSSLHTQVFHVPYEERKLDNANTFGEGESLRTCHSITKDTGAHIEISTSKDGSL 462
NK+R + +S+ TQVFHVP EERK + N FGEGE + C I + TGAH+E+S +KD L
Sbjct: 66 NKIRPIKASVITQVFHVPLEERKYKDMNQFGEGEQAKICLEIMQRTGAHLELSLAKDQGL 125
Query: 463 TFLITGKQSAVLEAR 507
+ +++GK AV++AR
Sbjct: 126 SIMVSGKLDAVMKAR 140
Score = 73.7 bits (173), Expect = 7e-13
Identities = 35/94 (37%), Positives = 54/94 (57%)
Frame = +3
Query: 480 KAERCSRSAAQILTHFQQQASKQISIPKEHYRWILGKQGQKLKELEKVTATKINVPGISD 659
K + ++ I+ Q QAS ++IPKEH+R+++GK G+KL++LE TATKI +P D
Sbjct: 132 KLDAVMKARKDIVARLQTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDD 191
Query: 660 NSXXXXXXXXXXXXXXAEHEIRVCSEEQSRKALE 761
S A HE+ + S EQ ++A+E
Sbjct: 192 PSNQIKITGTKEGIEKARHEVLLISAEQDKRAVE 225
Score = 35.9 bits (79), Expect = 0.18
Identities = 18/64 (28%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Frame = +3
Query: 480 KAERCSRSAAQILTHFQQQASKQISIP--KEHYRWILGKQGQKLKELEKVTATKINVPGI 653
+ E+C++ +++ + S IS+P K+ ++ I+GK G +K++ + + TKI++P
Sbjct: 562 EVEKCTKYMQKMVADLVEN-SYSISVPIFKQFHKNIIGKGGANIKKIREESNTKIDLPAE 620
Query: 654 SDNS 665
+ NS
Sbjct: 621 NSNS 624
>BC014305-1|AAH14305.2| 898|Homo sapiens HDLBP protein protein.
Length = 898
Score = 35.9 bits (79), Expect = 0.18
Identities = 18/64 (28%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Frame = +3
Query: 480 KAERCSRSAAQILTHFQQQASKQISIP--KEHYRWILGKQGQKLKELEKVTATKINVPGI 653
+ E+C++ +++ + S IS+P K+ ++ I+GK G +K++ + + TKI++P
Sbjct: 192 EVEKCTKYMQKMVADLVEN-SYSISVPIFKQFHKNIIGKGGANIKKIREESNTKIDLPAE 250
Query: 654 SDNS 665
+ NS
Sbjct: 251 NSNS 254
>AK131375-1|BAD18526.1| 577|Homo sapiens protein ( Homo sapiens
cDNA FLJ16432 fis, clone BRACE3010076, highly similar
to Vigilin. ).
Length = 577
Score = 35.9 bits (79), Expect = 0.18
Identities = 18/64 (28%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Frame = +3
Query: 480 KAERCSRSAAQILTHFQQQASKQISIP--KEHYRWILGKQGQKLKELEKVTATKINVPGI 653
+ E+C++ +++ + S IS+P K+ ++ I+GK G +K++ + + TKI++P
Sbjct: 59 EVEKCTKYMQKMVADLVEN-SYSISVPIFKQFHKNIIGKGGANIKKIREESNTKIDLPAE 117
Query: 654 SDNS 665
+ NS
Sbjct: 118 NSNS 121
>AK127833-1|BAC87153.1| 847|Homo sapiens protein ( Homo sapiens
cDNA FLJ45936 fis, clone PLACE7004103, highly similar
to Vigilin. ).
Length = 847
Score = 35.9 bits (79), Expect = 0.18
Identities = 18/64 (28%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Frame = +3
Query: 480 KAERCSRSAAQILTHFQQQASKQISIP--KEHYRWILGKQGQKLKELEKVTATKINVPGI 653
+ E+C++ +++ + S IS+P K+ ++ I+GK G +K++ + + TKI++P
Sbjct: 245 EVEKCTKYMQKMVADLVEN-SYSISVPIFKQFHKNIIGKGGANIKKIREESNTKIDLPAE 303
Query: 654 SDNS 665
+ NS
Sbjct: 304 NSNS 307
>AL589765-14|CAI17175.1| 516|Homo sapiens tudor and KH domain
containing protein.
Length = 516
Score = 32.7 bits (71), Expect = 1.7
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = +3
Query: 546 QISIPKEHYRWILGKQGQKLKELEKVTATKINV 644
++ +P+E + I+G+QG +K+L K T +I+V
Sbjct: 56 EMRVPQEAVKLIIGRQGANIKQLRKQTGARIDV 88
>AL589765-13|CAI17177.1| 561|Homo sapiens tudor and KH domain
containing protein.
Length = 561
Score = 32.7 bits (71), Expect = 1.7
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = +3
Query: 546 QISIPKEHYRWILGKQGQKLKELEKVTATKINV 644
++ +P+E + I+G+QG +K+L K T +I+V
Sbjct: 56 EMRVPQEAVKLIIGRQGANIKQLRKQTGARIDV 88
Score = 30.3 bits (65), Expect = 8.9
Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 2/112 (1%)
Frame = +3
Query: 492 CSRSAA--QILTHFQQQASKQISIPKEHYRWILGKQGQKLKELEKVTATKINVPGISDNS 665
C AA QILT S+Q+S+P+ I+G+ G+ ++ + K + KI S+ +
Sbjct: 109 CKAKAAIHQILTE-NTPVSEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGT 167
Query: 666 XXXXXXXXXXXXXXAEHEIRVCSEEQSRKALELS*YRKFTIHSSKGRTVKEQ 821
+ E+ K E RK HS++ R ++Q
Sbjct: 168 ---LLLSRLIKISGTQKEVAAAKHLILEKVSEDEELRKRIAHSAETRVPRKQ 216
>AF227192-1|AAF36701.1| 561|Homo sapiens tudor and KH
domain-containing protein protein.
Length = 561
Score = 32.7 bits (71), Expect = 1.7
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = +3
Query: 546 QISIPKEHYRWILGKQGQKLKELEKVTATKINV 644
++ +P+E + I+G+QG +K+L K T +I+V
Sbjct: 56 EMRVPQEAVKLIIGRQGANIKQLRKQTGARIDV 88
Score = 30.3 bits (65), Expect = 8.9
Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 2/112 (1%)
Frame = +3
Query: 492 CSRSAA--QILTHFQQQASKQISIPKEHYRWILGKQGQKLKELEKVTATKINVPGISDNS 665
C AA QILT S+Q+S+P+ I+G+ G+ ++ + K + KI S+ +
Sbjct: 109 CKAKAAIHQILTE-NTPVSEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGT 167
Query: 666 XXXXXXXXXXXXXXAEHEIRVCSEEQSRKALELS*YRKFTIHSSKGRTVKEQ 821
+ E+ K E RK HS++ R ++Q
Sbjct: 168 ---LLLSRLIKISGTQKEVAAAKHLILEKVSEDEELRKRIAHSAETRVPRKQ 216
>AF119121-1|AAD30971.1| 606|Homo sapiens putative RNA binding
protein protein.
Length = 606
Score = 32.7 bits (71), Expect = 1.7
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = +3
Query: 546 QISIPKEHYRWILGKQGQKLKELEKVTATKINV 644
++ +P+E + I+G+QG +K+L K T +I+V
Sbjct: 56 EMRVPQEAVKLIIGRQGANIKQLRKQTGARIDV 88
Score = 30.3 bits (65), Expect = 8.9
Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 2/112 (1%)
Frame = +3
Query: 492 CSRSAA--QILTHFQQQASKQISIPKEHYRWILGKQGQKLKELEKVTATKINVPGISDNS 665
C AA QILT S+Q+S+P+ I+G+ G+ ++ + K + KI S+ +
Sbjct: 109 CKAKAAIHQILTE-NTPVSEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGT 167
Query: 666 XXXXXXXXXXXXXXAEHEIRVCSEEQSRKALELS*YRKFTIHSSKGRTVKEQ 821
+ E+ K E RK HS++ R ++Q
Sbjct: 168 ---LLLSRLIKISGTQKEVAAAKHLILEKVSEDEELRKRIAHSAETRVPRKQ 216
>BC001962-1|AAH01962.1| 496|Homo sapiens exonuclease 3'-5'
domain-like 2 protein.
Length = 496
Score = 31.9 bits (69), Expect = 2.9
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = +2
Query: 77 GQGLPEETKMMHQQSMMVGDVIPVHP--DVPMHVEEMNNVGYENNVSFAYDDLFPALPHS 250
G+ + K +++S M G V H D H + VGY S YD+ F P
Sbjct: 181 GEATESQQKPRNKKSKMDGMVPGNHQGRDPRKHKRKPLGVGYSARKSPLYDNCFLHAPDG 240
Query: 251 QPLC 262
QPLC
Sbjct: 241 QPLC 244
>AK001600-1|BAA91781.1| 496|Homo sapiens protein ( Homo sapiens
cDNA FLJ10738 fis, clone NT2RP3001427, weakly similar to
WERNER SYNDROME HELICASE HOMOLOG. ).
Length = 496
Score = 31.9 bits (69), Expect = 2.9
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = +2
Query: 77 GQGLPEETKMMHQQSMMVGDVIPVHP--DVPMHVEEMNNVGYENNVSFAYDDLFPALPHS 250
G+ + K +++S M G V H D H + VGY S YD+ F P
Sbjct: 181 GEATESQQKPRNKKSKMDGMVPGNHQGRDPRKHKRKPLGVGYSARKSPLYDNCFLHAPDG 240
Query: 251 QPLC 262
QPLC
Sbjct: 241 QPLC 244
>BC021290-1|AAH21290.1| 598|Homo sapiens insulin-like growth factor
2 mRNA binding protein 2 protein.
Length = 598
Score = 31.5 bits (68), Expect = 3.9
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 579 ILGKQGQKLKELEKVTATKINVPGISDNS 665
++GK+G+ LK++E T TKI + + D S
Sbjct: 288 LIGKEGRNLKKIEHETGTKITISSLQDLS 316
>AF117107-1|AAD09827.1| 598|Homo sapiens IGF-II mRNA-binding
protein 2 protein.
Length = 598
Score = 31.5 bits (68), Expect = 3.9
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 579 ILGKQGQKLKELEKVTATKINVPGISDNS 665
++GK+G+ LK++E T TKI + + D S
Sbjct: 288 LIGKEGRNLKKIEHETGTKITISSLQDLS 316
>AF057352-1|AAD31596.1| 556|Homo sapiens hepatocellular carcinoma
autoantigen protein.
Length = 556
Score = 31.5 bits (68), Expect = 3.9
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 579 ILGKQGQKLKELEKVTATKINVPGISDNS 665
++GK+G+ LK++E T TKI + + D S
Sbjct: 289 LIGKEGRNLKKIEHETGTKITISSLQDLS 317
>X78136-1|CAA55015.1| 365|Homo sapiens hnRNP-E2 protein.
Length = 365
Score = 30.7 bits (66), Expect = 6.8
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = +3
Query: 531 QQASKQISIPKEHYRWILGKQGQKLKELEKVTATKINV 644
Q S +++IP + I+G+QG K+ E+ +++ +I +
Sbjct: 286 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKI 323
>DQ227344-1|ABB46294.1| 438|Homo sapiens IGF2 mRNA-binding protein
1 isoform protein.
Length = 438
Score = 30.7 bits (66), Expect = 6.8
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +3
Query: 579 ILGKQGQKLKELEKVTATKINVPGISD 659
++GK+G+ LK++E+ T TKI + + D
Sbjct: 152 LIGKEGRNLKKVEQDTETKITISSLQD 178
>BC107688-1|AAI07689.1| 335|Homo sapiens PCBP2 protein protein.
Length = 335
Score = 30.7 bits (66), Expect = 6.8
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = +3
Query: 531 QQASKQISIPKEHYRWILGKQGQKLKELEKVTATKINV 644
Q S +++IP + I+G+QG K+ E+ +++ +I +
Sbjct: 256 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKI 293
>BC071942-1|AAH71942.1| 366|Homo sapiens poly(rC) binding protein 2
protein.
Length = 366
Score = 30.7 bits (66), Expect = 6.8
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = +3
Query: 531 QQASKQISIPKEHYRWILGKQGQKLKELEKVTATKINV 644
Q S +++IP + I+G+QG K+ E+ +++ +I +
Sbjct: 287 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKI 324
>BC001155-1|AAH01155.1| 362|Homo sapiens poly(rC) binding protein 2
protein.
Length = 362
Score = 30.7 bits (66), Expect = 6.8
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = +3
Query: 531 QQASKQISIPKEHYRWILGKQGQKLKELEKVTATKINV 644
Q S +++IP + I+G+QG K+ E+ +++ +I +
Sbjct: 283 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKI 320
>AF198254-1|AAF37203.1| 577|Homo sapiens mRNA-binding protein CRDBP
protein.
Length = 577
Score = 30.7 bits (66), Expect = 6.8
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +3
Query: 579 ILGKQGQKLKELEKVTATKINVPGISD 659
++GK+G+ LK++E+ T TKI + + D
Sbjct: 291 LIGKEGRNLKKVEQDTETKITISSLQD 317
>AF117106-1|AAD09826.1| 577|Homo sapiens IGF-II mRNA-binding
protein 1 protein.
Length = 577
Score = 30.7 bits (66), Expect = 6.8
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +3
Query: 579 ILGKQGQKLKELEKVTATKINVPGISD 659
++GK+G+ LK++E+ T TKI + + D
Sbjct: 291 LIGKEGRNLKKVEQDTETKITISSLQD 317
>AB208825-1|BAD92062.1| 373|Homo sapiens poly(rC)-binding protein 2
isoform b variant protein.
Length = 373
Score = 30.7 bits (66), Expect = 6.8
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = +3
Query: 531 QQASKQISIPKEHYRWILGKQGQKLKELEKVTATKINV 644
Q S +++IP + I+G+QG K+ E+ +++ +I +
Sbjct: 294 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKI 331
>AB188306-1|BAD36897.1| 331|Homo sapiens poly(rC) binding protein 2
protein.
Length = 331
Score = 30.7 bits (66), Expect = 6.8
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = +3
Query: 531 QQASKQISIPKEHYRWILGKQGQKLKELEKVTATKINV 644
Q S +++IP + I+G+QG K+ E+ +++ +I +
Sbjct: 252 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKI 289
>BC012061-1|AAH12061.1| 313|Homo sapiens PCBP3 protein protein.
Length = 313
Score = 30.3 bits (65), Expect = 8.9
Identities = 10/43 (23%), Positives = 27/43 (62%)
Frame = +3
Query: 537 ASKQISIPKEHYRWILGKQGQKLKELEKVTATKINVPGISDNS 665
++ +++IP + I+G+QG K+ E+ +++ +I + ++ S
Sbjct: 236 STHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGS 278
>AY780793-1|AAV98363.1| 361|Homo sapiens poly(rC) binding protein 3
protein.
Length = 361
Score = 30.3 bits (65), Expect = 8.9
Identities = 10/43 (23%), Positives = 27/43 (62%)
Frame = +3
Query: 537 ASKQISIPKEHYRWILGKQGQKLKELEKVTATKINVPGISDNS 665
++ +++IP + I+G+QG K+ E+ +++ +I + ++ S
Sbjct: 284 STHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGS 326
>AL589765-15|CAI17176.1| 557|Homo sapiens tudor and KH domain
containing protein.
Length = 557
Score = 30.3 bits (65), Expect = 8.9
Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 2/112 (1%)
Frame = +3
Query: 492 CSRSAA--QILTHFQQQASKQISIPKEHYRWILGKQGQKLKELEKVTATKINVPGISDNS 665
C AA QILT S+Q+S+P+ I+G+ G+ ++ + K + KI S+ +
Sbjct: 105 CKAKAAIHQILTE-NTPVSEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGT 163
Query: 666 XXXXXXXXXXXXXXAEHEIRVCSEEQSRKALELS*YRKFTIHSSKGRTVKEQ 821
+ E+ K E RK HS++ R ++Q
Sbjct: 164 ---LLLSRLIKISGTQKEVAAAKHLILEKVSEDEELRKRIAHSAETRVPRKQ 212
>AK094301-1|BAC04327.1| 351|Homo sapiens protein ( Homo sapiens
cDNA FLJ36982 fis, clone BRACE2006488, highly similar to
POLY(RC) BINDING PROTEIN 2. ).
Length = 351
Score = 30.3 bits (65), Expect = 8.9
Identities = 10/43 (23%), Positives = 27/43 (62%)
Frame = +3
Query: 537 ASKQISIPKEHYRWILGKQGQKLKELEKVTATKINVPGISDNS 665
++ +++IP + I+G+QG K+ E+ +++ +I + ++ S
Sbjct: 274 STHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGS 316
>AF176329-1|AAG09240.1| 339|Homo sapiens alphaCP-3 protein.
Length = 339
Score = 30.3 bits (65), Expect = 8.9
Identities = 10/43 (23%), Positives = 27/43 (62%)
Frame = +3
Query: 537 ASKQISIPKEHYRWILGKQGQKLKELEKVTATKINVPGISDNS 665
++ +++IP + I+G+QG K+ E+ +++ +I + ++ S
Sbjct: 262 STHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGS 304
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,584,193
Number of Sequences: 237096
Number of extensions: 2458303
Number of successful extensions: 5395
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 5111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5395
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10426655866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -