Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00797
         (830 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g24530.1 68418.m02897 oxidoreductase, 2OG-Fe(II) oxygenase fa...    31   1.2  
At1g06250.1 68414.m00661 lipase class 3 family protein similar t...    29   2.9  
At3g59660.1 68416.m06656 C2 domain-containing protein / GRAM dom...    29   3.8  
At4g35520.1 68417.m05049 DNA mismatch repair family protein simi...    29   5.0  
At2g28810.1 68415.m03503 Dof-type zinc finger domain-containing ...    28   6.6  
At4g16563.1 68417.m02506 aspartyl protease family protein contai...    28   8.7  
At1g29720.1 68414.m03633 protein kinase family protein contains ...    28   8.7  

>At5g24530.1 68418.m02897 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to flavanone 3-hydroxylase
           [Persea americana][GI:727410]; contains PF03171
           2OG-Fe(II) oxygenase superfamily domain
          Length = 341

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +3

Query: 441 YQQRWQSNFP-YHWKAERCSRSAAQILTHFQQQASKQISIPKEHYRWILGKQGQKL 605
           Y   W SN P +     + SR   ++    ++  S+ + + K++ + +LG+QGQ +
Sbjct: 137 YVNEWPSNPPSFKEIVSKYSREVREVGFKIEELISESLGLEKDYMKKVLGEQGQHM 192


>At1g06250.1 68414.m00661 lipase class 3 family protein similar to
           lipase GB:AAD01804 GI:4103627 from [Dianthus
           caryophyllus]; contains Pfam profile PF01764: Lipase
          Length = 423

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
 Frame = +2

Query: 80  QGLPEETKMMHQQSMMVGDVIPVHPDVP---MHVEEMNNVGYE 199
           +G+P+  K++  Q+   G + P+ PD+    +H  EM+ VGY+
Sbjct: 3   EGIPKRWKVLSGQNKWKGLLDPLDPDLRRYIIHYGEMSQVGYD 45


>At3g59660.1 68416.m06656 C2 domain-containing protein / GRAM
           domain-containing protein low similarity to GLUT4
           vesicle protein [Rattus norvegicus] GI:4193489; contains
           Pfam profiles PF00168: C2 domain, PF02893: GRAM domain
          Length = 594

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -1

Query: 473 IRKVRLPSLLVDISMCAPVSLVMEWQVLKDSPSPKVLALSSFRSSY 336
           +R+++  S+  +  MC P + V EWQ +  SP  KVL   + +  +
Sbjct: 457 VREIKFRSIC-NSPMCPPDTAVTEWQHVVLSPDKKVLVFETVQQPH 501


>At4g35520.1 68417.m05049 DNA mismatch repair family protein similar
           to SP|Q9UHC1 DNA mismatch repair protein Mlh3 (MutL
           protein homolog 3) {Homo sapiens}; contains Pfam
           profiles PF02518: ATPase, histidine kinase-, DNA gyrase
           B-, and HSP90-like domain protein, PF01119: DNA mismatch
           repair protein, C-terminal domain
          Length = 1151

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +1

Query: 328 HVPYEERKLDNANTFGEGESLRTCHSITKDTGAHIEISTSK 450
           H+   E++L +A+        RT HS T+D   H + S+ +
Sbjct: 819 HIQETEKRLSSASDLKASAGCRTVHSETQDEDVHEDFSSEE 859


>At2g28810.1 68415.m03503 Dof-type zinc finger domain-containing
           protein similar to zinc finger protein OBP2 GI:5059394
           from [Arabidopsis thaliana]
          Length = 340

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 166 HGYIRMNGYHISNHHGLLMHHF 101
           H  ++ NG  +S HH +L HHF
Sbjct: 28  HHQLQENGSLVSGHHQVLSHHF 49


>At4g16563.1 68417.m02506 aspartyl protease family protein contains
           Pfam profile: PF00026 eukaryotic aspartyl protease
          Length = 499

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 459 SNFPYHWKAERCSRSAAQILTHFQQQASKQISIP 560
           S+ P H      SRS+A+   H  +Q  +Q+S+P
Sbjct: 43  SSSPLHLLKSSSSRSSARFRRHHHKQQQQQLSLP 76


>At1g29720.1 68414.m03633 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 300

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/51 (23%), Positives = 27/51 (52%)
 Frame = +2

Query: 5   DPGVYGVIFQFDLIQYFCTVTTRRGQGLPEETKMMHQQSMMVGDVIPVHPD 157
           DPG+YG  +    ++   T ++    G+ ++T    + S+   D+ P++P+
Sbjct: 235 DPGIYGHDWSISKLRDIDTHSSSSTSGVTDQTTTTMKSSVSGCDLYPLYPE 285


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,267,192
Number of Sequences: 28952
Number of extensions: 351530
Number of successful extensions: 979
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1911862400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)