Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00796
(727 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45540| Best HMM Match : HSP70 (HMM E-Value=0) 142 3e-34
SB_8490| Best HMM Match : HSP70 (HMM E-Value=0) 140 1e-33
SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.) 126 2e-29
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0) 122 3e-28
SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36) 85 7e-17
SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.) 75 8e-14
SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049) 58 1e-08
SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 2e-05
SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07) 44 1e-04
SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.058
SB_20927| Best HMM Match : Acyl_transf_1 (HMM E-Value=3.8e-07) 33 0.31
SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16) 31 0.95
SB_655| Best HMM Match : 7tm_1 (HMM E-Value=4.8e-20) 29 2.9
SB_45661| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_23837| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_55989| Best HMM Match : zf-C2H2 (HMM E-Value=8e-08) 28 6.7
SB_27251| Best HMM Match : Extensin_2 (HMM E-Value=0.077) 28 6.7
SB_8459| Best HMM Match : DUF408 (HMM E-Value=0.62) 28 6.7
>SB_45540| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1097
Score = 142 bits (344), Expect = 3e-34
Identities = 66/86 (76%), Positives = 73/86 (84%)
Frame = +1
Query: 253 LNPNNTVFDAKRLIGRKFDDPKIQQDMKHWPFKVINDCGKPKIQIEFKGETKRFAPEEIS 432
+NP NTVFDAKRLIGRKFDDP + +DM HWPF VI + +PKIQ+EFKGE K F PEEIS
Sbjct: 61 MNPENTVFDAKRLIGRKFDDPVVARDMTHWPFHVIREGERPKIQVEFKGEKKSFFPEEIS 120
Query: 433 SMVLTKMKETAEAYLGSTVRDAVVTV 510
SMVLTKMKETAEAYLG+ V DAVVTV
Sbjct: 121 SMVLTKMKETAEAYLGAKVTDAVVTV 146
Score = 125 bits (301), Expect = 4e-29
Identities = 59/69 (85%), Positives = 65/69 (94%)
Frame = +3
Query: 510 PAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAALAYGLDKNLKGERNVLIFDLGGGTFD 689
PAYF+DSQRQATKDAG IAGLNVLRIINEPTAAA+AYGLDK + ERNVLI+DLGGGTFD
Sbjct: 147 PAYFHDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGVERNVLIYDLGGGTFD 206
Query: 690 VSVLTIDEG 716
VSVLTI++G
Sbjct: 207 VSVLTIEDG 215
Score = 116 bits (279), Expect = 2e-26
Identities = 53/58 (91%), Positives = 56/58 (96%)
Frame = +2
Query: 80 KMPAIGIDLGTTYSCVGVWQHGNVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 253
K PA+GIDLGTTYSCVGV+QHG VEIIANDQGNRTTPSYVAF+DTERLIGDAAKNQVA
Sbjct: 3 KTPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFSDTERLIGDAAKNQVA 60
>SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 640
Score = 140 bits (339), Expect = 1e-33
Identities = 65/72 (90%), Positives = 70/72 (97%)
Frame = +3
Query: 510 PAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAALAYGLDKNLKGERNVLIFDLGGGTFD 689
PAYFNDSQRQATKDAG IAGLNVLR+INEPTAAALAYGLDK+L GE+NVLIFDLGGGTFD
Sbjct: 147 PAYFNDSQRQATKDAGTIAGLNVLRVINEPTAAALAYGLDKSLSGEKNVLIFDLGGGTFD 206
Query: 690 VSVLTIDEGSLF 725
VS+LTID+GSLF
Sbjct: 207 VSILTIDDGSLF 218
Score = 136 bits (328), Expect = 2e-32
Identities = 70/124 (56%), Positives = 86/124 (69%)
Frame = +1
Query: 139 ARERGDHRERPGQPYYTIVRRVHGHGASHRRRSQEPGRLNPNNTVFDAKRLIGRKFDDPK 318
A ++G+ R P +T R+ G A ++ LNP NT+FDAKRLIGR++DD
Sbjct: 30 ANDQGN-RTTPSYVGFTDTERLVGDAAKNQVA------LNPENTIFDAKRLIGRRYDDAT 82
Query: 319 IQQDMKHWPFKVINDCGKPKIQIEFKGETKRFAPEEISSMVLTKMKETAEAYLGSTVRDA 498
+Q DMK WPFK+I+D KPKIQ+E+KGE K FA EEISSMVL KMKETAEAYLG V A
Sbjct: 83 VQSDMKLWPFKIISDNNKPKIQVEYKGERKTFAAEEISSMVLGKMKETAEAYLGQKVTSA 142
Query: 499 VVTV 510
V+TV
Sbjct: 143 VITV 146
Score = 113 bits (272), Expect = 1e-25
Identities = 52/58 (89%), Positives = 55/58 (94%)
Frame = +2
Query: 80 KMPAIGIDLGTTYSCVGVWQHGNVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 253
K PAIGIDLGTTYSCVGV+Q+G VEIIANDQGNRTTPSYV FTDTERL+GDAAKNQVA
Sbjct: 3 KAPAIGIDLGTTYSCVGVFQNGKVEIIANDQGNRTTPSYVGFTDTERLVGDAAKNQVA 60
>SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 746
Score = 126 bits (303), Expect = 2e-29
Identities = 59/69 (85%), Positives = 65/69 (94%)
Frame = +3
Query: 510 PAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAALAYGLDKNLKGERNVLIFDLGGGTFD 689
PAYFNDSQRQATKDAG I+GLNVLRIINEPTAAA+AYGLDK + ERNVLIFDLGGGTFD
Sbjct: 240 PAYFNDSQRQATKDAGVISGLNVLRIINEPTAAAIAYGLDKKVGQERNVLIFDLGGGTFD 299
Query: 690 VSVLTIDEG 716
VSVL+I++G
Sbjct: 300 VSVLSIEDG 308
Score = 117 bits (281), Expect = 1e-26
Identities = 61/111 (54%), Positives = 74/111 (66%), Gaps = 25/111 (22%)
Frame = +1
Query: 253 LNPNNTVFDAKRLIGRKFDDPKIQQDMKHWPF-------------------------KVI 357
+NP NT+FDAKRLIGR+FDDP ++ DMKHW F +V+
Sbjct: 61 MNPTNTIFDAKRLIGRRFDDPGVKDDMKHWSFEVVNEAGRPKVKVEYKGETKTFFAEEVV 120
Query: 358 NDCGKPKIQIEFKGETKRFAPEEISSMVLTKMKETAEAYLGSTVRDAVVTV 510
N+ G+PK+++E+KGETK F EEISSMVL KMKETAEAYLG V DAVVTV
Sbjct: 121 NEAGRPKVKVEYKGETKTFFAEEISSMVLNKMKETAEAYLGCKVTDAVVTV 171
Score = 115 bits (277), Expect = 3e-26
Identities = 53/58 (91%), Positives = 55/58 (94%)
Frame = +2
Query: 80 KMPAIGIDLGTTYSCVGVWQHGNVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA 253
K PAIGIDLGTTYSCVGV+QHG VEIIANDQGNRTTPSYVAFTD ERL+GDAAKNQVA
Sbjct: 3 KAPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDEERLVGDAAKNQVA 60
Score = 48.4 bits (110), Expect = 6e-06
Identities = 24/29 (82%), Positives = 25/29 (86%)
Frame = +1
Query: 424 EISSMVLTKMKETAEAYLGSTVRDAVVTV 510
+ISSMVL KMKETAEAYLG V DAVVTV
Sbjct: 211 QISSMVLNKMKETAEAYLGCKVTDAVVTV 239
Score = 38.3 bits (85), Expect = 0.006
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 510 PAYFNDSQRQATKDAG 557
PAYFNDSQRQATKDAG
Sbjct: 172 PAYFNDSQRQATKDAG 187
>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1327
Score = 122 bits (294), Expect = 3e-28
Identities = 56/69 (81%), Positives = 65/69 (94%)
Frame = +3
Query: 510 PAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAALAYGLDKNLKGERNVLIFDLGGGTFD 689
PAYFND+QRQATKDAGAIAGL V+RIINEPTAAA+AYG+DK +GE+N+L+FDLGGGTFD
Sbjct: 845 PAYFNDAQRQATKDAGAIAGLTVMRIINEPTAAAIAYGMDKK-EGEKNILVFDLGGGTFD 903
Query: 690 VSVLTIDEG 716
VS+LTID G
Sbjct: 904 VSLLTIDNG 912
Score = 118 bits (283), Expect = 6e-27
Identities = 56/85 (65%), Positives = 66/85 (77%)
Frame = +1
Query: 256 NPNNTVFDAKRLIGRKFDDPKIQQDMKHWPFKVINDCGKPKIQIEFKGETKRFAPEEISS 435
NP NTVFDAKRLIGR +DD +Q D+K +PFKV++ KP +Q++ K E K FA EEIS+
Sbjct: 760 NPENTVFDAKRLIGRSWDDTSVQNDLKFFPFKVVDKNKKPHVQVKVKDEIKTFAAEEISA 819
Query: 436 MVLTKMKETAEAYLGSTVRDAVVTV 510
MVLTKMKETAEAYLG V AVVTV
Sbjct: 820 MVLTKMKETAEAYLGKKVTHAVVTV 844
Score = 92.7 bits (220), Expect = 3e-19
Identities = 44/54 (81%), Positives = 49/54 (90%), Gaps = 1/54 (1%)
Frame = +2
Query: 92 IGIDLGTTYSCVGVWQHGNVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQV 250
IGIDLGTTYSCVGV+++G VEIIANDQGNR TPSYVAFT+ ERLIGD AKNQ+
Sbjct: 704 IGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTEEGERLIGDGAKNQL 757
>SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36)
Length = 437
Score = 84.6 bits (200), Expect = 7e-17
Identities = 43/72 (59%), Positives = 54/72 (75%)
Frame = +3
Query: 510 PAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAALAYGLDKNLKGERNVLIFDLGGGTFD 689
PA F+ QR AT A ++AG+ VLR+INEPTAAALAYGL K +G NV++ DLGGGT D
Sbjct: 177 PAEFDIKQRNATVKAASLAGITVLRVINEPTAAALAYGLHKK-EGVANVMVVDLGGGTLD 235
Query: 690 VSVLTIDEGSLF 725
VS+L I +G +F
Sbjct: 236 VSLLNI-QGGMF 246
Score = 58.8 bits (136), Expect = 4e-09
Identities = 28/58 (48%), Positives = 39/58 (67%), Gaps = 2/58 (3%)
Frame = +2
Query: 80 KMPAIGIDLGTTYSCVGVWQ--HGNVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQ 247
K IGIDLGTTYSCVG +Q G ++I +++ ++ PS VAFTD L+G+ A +Q
Sbjct: 30 KPKIIGIDLGTTYSCVGAYQAISGRIDIFSDENDDKVVPSLVAFTDKGVLVGEKALSQ 87
Score = 58.4 bits (135), Expect = 5e-09
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Frame = +1
Query: 253 LNPNNTVFDAKRLIGRKFDDPKIQQDMKHWPFKVIND-CGKPKIQIEFKGETKRFAPEEI 429
+NP NT++DAKR IG+ F ++ + K + F+V D G + KG PEEI
Sbjct: 90 INPKNTIYDAKRFIGKTFTKQELLEIGKLYQFRVTTDKRGNAGFLVGKKGNFTVITPEEI 149
Query: 430 SSMVLTKMKETAEAYLGSTVRDAVVTV 510
V+ K++ AE L +TV AV++V
Sbjct: 150 GGYVIKKLRTMAERNLTTTVTKAVMSV 176
>SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 74.5 bits (175), Expect = 8e-14
Identities = 34/86 (39%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Frame = +1
Query: 256 NPNNTVFDAKRLIGRKFDDPKIQQDMKHWPFKVIN-DCGKPKIQIEFKGETKRFAPEEIS 432
N NT+ KR IGRKF DP +Q+++ H P+KV+ IQ+++ G+ + F+PE++
Sbjct: 118 NLKNTISQFKRFIGRKFSDPAVQKEIPHLPYKVVELPNDSIGIQVQYLGKQEVFSPEQVM 177
Query: 433 SMVLTKMKETAEAYLGSTVRDAVVTV 510
+M+ T++K TAE L + V D V++V
Sbjct: 178 AMLFTRLKTTAEIALKTKVTDCVISV 203
Score = 59.7 bits (138), Expect = 2e-09
Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Frame = +3
Query: 495 CGSHSPAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAALAYGL---DKNLKGERNVLIF 665
C P+Y+ D QR+ DA A AGLN LR++N+ TA +LAYG+ D RNV+
Sbjct: 199 CVISVPSYYTDRQRRCMLDASATAGLNCLRLMNDTTAVSLAYGIYKQDLPTDKPRNVVFV 258
Query: 666 DLGGGTFDVSVLTIDEGSL 722
D+G + V + +G L
Sbjct: 259 DIGHSSLQVCITAFLKGQL 277
Score = 51.2 bits (117), Expect = 8e-07
Identities = 22/55 (40%), Positives = 34/55 (61%)
Frame = +2
Query: 83 MPAIGIDLGTTYSCVGVWQHGNVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQ 247
M +G D+G + V + G +E +AN+ +R TPS+V+ D +RLIG + KNQ
Sbjct: 1 MSVVGFDVGNQSCYIAVARGGGIETVANEFSDRCTPSFVSLGDKQRLIGTSGKNQ 55
>SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049)
Length = 179
Score = 57.6 bits (133), Expect = 1e-08
Identities = 40/74 (54%), Positives = 44/74 (59%), Gaps = 26/74 (35%)
Frame = +3
Query: 510 PAYFNDSQRQATKDAGAIAGLN------------------------VLRIINEPTAAALA 617
PA+FND+QRQATKDAG IAGL+ VLRIINEPTAAA+A
Sbjct: 46 PAHFNDAQRQATKDAGTIAGLDVLSRTASERPPSRFRRRRPHGRSRVLRIINEPTAAAIA 105
Query: 618 YGLDK--NLKGERN 653
YGLDK K ERN
Sbjct: 106 YGLDKARGGKAERN 119
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/44 (52%), Positives = 33/44 (75%)
Frame = +1
Query: 379 IQIEFKGETKRFAPEEISSMVLTKMKETAEAYLGSTVRDAVVTV 510
I +E GE + FAPE+IS++VL ++K AEA+LG V+ AV+TV
Sbjct: 2 IAVEVCGEKRSFAPEQISAVVLEQLKADAEAFLGQAVKRAVITV 45
>SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1019
Score = 46.8 bits (106), Expect = 2e-05
Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 4/62 (6%)
Frame = +3
Query: 510 PAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAALAYGL--DKNLKG--ERNVLIFDLGG 677
P +FN ++R+A A + GLNVL+I+N TA AL YGL K+ E++ + +D+G
Sbjct: 113 PPFFNQAERRALLRAAELVGLNVLQIMNSNTAVALNYGLFQQKSFNDTLEKHFMFYDMGA 172
Query: 678 GT 683
+
Sbjct: 173 SS 174
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 412 FAPEEISSMVLTKMKETAEAYLGSTVRDAVVTV 510
F PEE+ M+L + E + ++D V+TV
Sbjct: 80 FTPEELMGMILNHSRFIGEQFADHPIKDVVLTV 112
>SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07)
Length = 592
Score = 44.0 bits (99), Expect = 1e-04
Identities = 19/28 (67%), Positives = 23/28 (82%)
Frame = +2
Query: 143 GNVEIIANDQGNRTTPSYVAFTDTERLI 226
GN IIAND G+R TP+ VAF+DTE+LI
Sbjct: 83 GNTTIIANDAGDRVTPAMVAFSDTEKLI 110
>SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 766
Score = 35.1 bits (77), Expect = 0.058
Identities = 12/21 (57%), Positives = 18/21 (85%)
Frame = +3
Query: 654 VLIFDLGGGTFDVSVLTIDEG 716
+ ++DLGGGTFD+S+L I +G
Sbjct: 2 IAVYDLGGGTFDISILEIQKG 22
>SB_20927| Best HMM Match : Acyl_transf_1 (HMM E-Value=3.8e-07)
Length = 426
Score = 32.7 bits (71), Expect = 0.31
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = -1
Query: 625 RPYASAAAVGSLMMRSTFNPAMAPASLVA 539
RPY S V L+ R TF+ A+ PAS+VA
Sbjct: 374 RPYGSVEEVRRLVWRCTFSSAVGPASIVA 402
>SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16)
Length = 212
Score = 31.1 bits (67), Expect = 0.95
Identities = 15/25 (60%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
Frame = +2
Query: 152 EIIANDQGNRTTPSYVAFT-DTERL 223
++I N +G+RTTPS VAFT + ERL
Sbjct: 7 KVIENAEGSRTTPSVVAFTPEGERL 31
>SB_655| Best HMM Match : 7tm_1 (HMM E-Value=4.8e-20)
Length = 376
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = -2
Query: 228 PMRRSVSVNATYDGVVRLPWSF-AMISTFPCCHTPTH-EYVVPKSIPIAGILNINYC 64
P+R ++ N Y GV+ L W F A+I++ +H EY + + IL ++ C
Sbjct: 153 PLRHRMTTNRMYSGVICLTWVFAALIASLATYIKTSHVEYDIYAAWMSVSILLVSLC 209
>SB_45661| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 189
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = +3
Query: 315 QDSAGHEALALQSDQRLRQTENTDRVQR*DETICARRN*QHGADKNEGDGGSLSGKYSAG 494
++S G E+ +SD+ E +D + E + + + G+D E DG G+ S G
Sbjct: 102 EESDGEESDGEESDEEGSDGEESDGEESDGEESDGKGSDEEGSDGEESDGEESDGEESDG 161
Query: 495 CGS 503
GS
Sbjct: 162 EGS 164
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +3
Query: 315 QDSAGHEALALQSDQRLRQTENTDRVQR*DETICARRN*QHGADKNEGDGGSLSGKYSAG 494
++S G E+ +SD E +D + E + + G+D E DG G+ S G
Sbjct: 77 EESDGEESDGEESDGEESDGEESDGEESDGEESDGEESDEEGSDGEESDGEESDGEESDG 136
Query: 495 CGS 503
GS
Sbjct: 137 KGS 139
>SB_23837| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 213
Score = 28.7 bits (61), Expect = 5.1
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = +1
Query: 73 NIQNASYRN*FGNNILMCWSMAARERGDHRERPGQPYYTI 192
NI+ YR FG + C+ + +R R G P++ +
Sbjct: 117 NIKPLLYRGRFGGTVFGCYFWRSMHHCKYRHRSGSPFHNV 156
>SB_55989| Best HMM Match : zf-C2H2 (HMM E-Value=8e-08)
Length = 1011
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 465 GSLSGKYSAGCGSHSPAYFNDSQRQATKD 551
G +G A C S S AYF+DS + ++D
Sbjct: 241 GRKAGNQGASCRSSSSAYFSDSAPEISQD 269
>SB_27251| Best HMM Match : Extensin_2 (HMM E-Value=0.077)
Length = 1043
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -1
Query: 676 PPRSKIRTFLSPLRFLSRPYASAAAVGSLMMRSTFNPAMAPA 551
PP K+ SPL+ L R + A V LMM++ P P+
Sbjct: 384 PPSPKLSKSPSPLQKLRRSPSPAEMVQQLMMQTQMQPRRPPS 425
>SB_8459| Best HMM Match : DUF408 (HMM E-Value=0.62)
Length = 581
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 465 GSLSGKYSAGCGSHSPAYFNDSQRQATKD 551
G +G A C S S AYF+DS + ++D
Sbjct: 310 GRKAGNQGASCRSSSSAYFSDSAPEISQD 338
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,076,258
Number of Sequences: 59808
Number of extensions: 445846
Number of successful extensions: 1505
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1499
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -