Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00796
         (727 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   2.9  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.9  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    22   6.8  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   6.8  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    21   9.0  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    21   9.0  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   9.0  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   9.0  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   9.0  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 17/55 (30%), Positives = 21/55 (38%)
 Frame = +3

Query: 459 DGGSLSGKYSAGCGSHSPAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAALAYG 623
           D  SL  K      S +       Q +A K A  +   N   II+EPT     YG
Sbjct: 329 DPDSLRRKRQKINNSQNALVLRHVQAEAEKHAAMLYQYNFNIIISEPTERISPYG 383


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +1

Query: 310 DPKIQQDMKHWPF 348
           DP + +D +HW F
Sbjct: 855 DPAVYEDWRHWKF 867


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 54 FHNKQYITRRKTFQFA 7
          FH  +Y+TRR+  + A
Sbjct: 27 FHYNRYLTRRRRIEIA 42


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 54  FHNKQYITRRKTFQFA 7
           FH  +Y+TRR+  + A
Sbjct: 289 FHYNRYLTRRRRIEIA 304


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 54 FHNKQYITRRKTFQFA 7
          FH   Y+TRR+  + A
Sbjct: 27 FHYNHYLTRRRRIEIA 42


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 54 FHNKQYITRRKTFQFA 7
          FH  +Y+TRR+  + A
Sbjct: 27 FHFNRYLTRRRRIEIA 42


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 12/49 (24%), Positives = 21/49 (42%)
 Frame = +1

Query: 235 SQEPGRLNPNNTVFDAKRLIGRKFDDPKIQQDMKHWPFKVINDCGKPKI 381
           S     L   +++F    L+G    DP I + +K     +   C KP++
Sbjct: 179 SARENELRALSSLFSKGCLVGTWSPDPAINRRLKETYSNMCALCEKPEV 227


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 12/49 (24%), Positives = 21/49 (42%)
 Frame = +1

Query: 235 SQEPGRLNPNNTVFDAKRLIGRKFDDPKIQQDMKHWPFKVINDCGKPKI 381
           S     L   +++F    L+G    DP I + +K     +   C KP++
Sbjct: 179 SARENELRALSSLFSKGCLVGTWSPDPAINRRLKETYSNMCALCEKPEV 227


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 12/49 (24%), Positives = 21/49 (42%)
 Frame = +1

Query: 235 SQEPGRLNPNNTVFDAKRLIGRKFDDPKIQQDMKHWPFKVINDCGKPKI 381
           S     L   +++F    L+G    DP I + +K     +   C KP++
Sbjct: 179 SARENELRALSSLFSKGCLVGTWSPDPAINRRLKETYSNMCALCEKPEV 227


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,897
Number of Sequences: 438
Number of extensions: 4840
Number of successful extensions: 21
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)