Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00795
         (703 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                131   6e-31
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           83   3e-16
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)              57   2e-08
SB_38135| Best HMM Match : S-antigen (HMM E-Value=0.95)                30   2.1  
SB_25301| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.066)             28   6.4  
SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)                   28   8.4  

>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score =  131 bits (316), Expect = 6e-31
 Identities = 61/90 (67%), Positives = 72/90 (80%), Gaps = 6/90 (6%)
 Frame = +2

Query: 260 STKMPWFKGWQVER------KEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGG 421
           +++MPWFK W +ER      KE  A G  L E LD+ILPP+RP+  PLRLPLQDVYKIGG
Sbjct: 58  TSQMPWFKQWTIERVDPATKKEANASGVTLFEGLDSILPPSRPSGLPLRLPLQDVYKIGG 117

Query: 422 IGTVPVGRVETGVLKPGTIVVFAPANITTK 511
           IGTVPVGRVETGVLKPGT+V F+P+NITT+
Sbjct: 118 IGTVPVGRVETGVLKPGTVVTFSPSNITTE 147



 Score =  112 bits (270), Expect = 2e-25
 Identities = 50/64 (78%), Positives = 57/64 (89%)
 Frame = +1

Query: 511 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN 690
           VKSVEMHHE+L EA+PGDNVGFNVKNVSVK+++RG VAGD KNNPPK    FTAQVIV+N
Sbjct: 148 VKSVEMHHESLAEALPGDNVGFNVKNVSVKDIKRGNVAGDFKNNPPKPCKSFTAQVIVMN 207

Query: 691 HPGQ 702
           HPG+
Sbjct: 208 HPGE 211


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 82.6 bits (195), Expect = 3e-16
 Identities = 35/65 (53%), Positives = 49/65 (75%)
 Frame = +3

Query: 9   GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKK 188
           GEFE G  + GQTREHA+LA T GVK L++ VNKMD     ++E R+EEIK +++ ++KK
Sbjct: 258 GEFETGFERGGQTREHAMLAKTAGVKHLVILVNKMDDPTVKWNEERYEEIKVKLTPFLKK 317

Query: 189 IGYNP 203
           +G+NP
Sbjct: 318 VGFNP 322


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 25/37 (67%), Positives = 29/37 (78%)
 Frame = +3

Query: 6   TGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 116
           TGEFEAG    GQTREHA+L  +LGV QLIV +NK+D
Sbjct: 48  TGEFEAGFESGGQTREHAILVRSLGVTQLIVAINKLD 84


>SB_38135| Best HMM Match : S-antigen (HMM E-Value=0.95)
          Length = 770

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 21/79 (26%), Positives = 31/79 (39%)
 Frame = +2

Query: 302 KEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIV 481
           K+ + D K  I  LD  L P +P    L  P   V +I G    P G      +  G+++
Sbjct: 615 KKMENDVKVNIGGLDVDLNPTQPLKNLLNKPANPVMRINGYPVNPTGSATLSQMDDGSLI 674

Query: 482 VFAPANITTKSNLWRCTTK 538
                  T    L + TT+
Sbjct: 675 PEMSLQETPMYELIQPTTR 693


>SB_25301| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.066)
          Length = 177

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +2

Query: 374 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAP 493
           ++P    + D Y + G+GTV  G    G+++    ++  P
Sbjct: 102 EEPSEFQIDDTYSVPGVGTVISGTCMKGIIRLNDTLLLGP 141


>SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4700

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +3

Query: 162  KEVSSYIKKIGYNPAAVAFVPISGWHGDNMLSLQPKCLGSRDGRWSV-KKAKLTENASLK 338
            K+V ++ KKIG+   A  F  +S   G  +++ Q   L +++G W + +   L +N   K
Sbjct: 4230 KDVEAHGKKIGFTFDAKNFHNVSLGQGQEIVAEQCLDLAAKEGHWVILQNVHLVKNWLPK 4289

Query: 339  L 341
            L
Sbjct: 4290 L 4290


>SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)
          Length = 1213

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 9/69 (13%)
 Frame = -1

Query: 181  MYEDTS---FLISSNLGSLYGGSVESILFTPTMSCLTPRVKASKAC------SRV*PFLE 29
            +Y+D S    L+S N   L   ++E IL TPT    +    + K C      +   P   
Sbjct: 796  LYQDPSKLTALLSCNFNDLKIDNMEVILLTPTSMAASMATSSKKVCPSSAPTTTTNPTPS 855

Query: 28   IPASNSPVP 2
            +   NSP+P
Sbjct: 856  VTNGNSPIP 864


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,184,521
Number of Sequences: 59808
Number of extensions: 597273
Number of successful extensions: 1913
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1909
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)