Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00795
(703 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 154 7e-38
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 154 7e-38
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 154 7e-38
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 84 1e-16
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 82 3e-16
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 81 1e-15
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 81 1e-15
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 39 0.003
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 39 0.003
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 37 0.016
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 37 0.016
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 37 0.016
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 35 0.049
Z82283-3|CAB05283.1| 485|Caenorhabditis elegans Hypothetical pr... 31 0.80
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 31 1.1
AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical ... 29 2.4
AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical ... 29 2.4
AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein. 29 2.4
AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein. 29 2.4
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 28 7.4
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 28 7.4
Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z70205-2|CAA94116.1| 529|Caenorhabditis elegans Hypothetical pr... 27 9.8
AL132864-2|CAB60592.1| 201|Caenorhabditis elegans Hypothetical ... 27 9.8
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 27 9.8
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 154 bits (373), Expect = 7e-38
Identities = 66/87 (75%), Positives = 77/87 (88%)
Frame = +2
Query: 251 VEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGT 430
+E S+ MPWFKGW VERKEG A GK L+EALD+I+PP RPTD+PLRLPLQDVYKIGGIGT
Sbjct: 168 LEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDRPLRLPLQDVYKIGGIGT 227
Query: 431 VPVGRVETGVLKPGTIVVFAPANITTK 511
VPVGRVETG++KPG +V FAP N+TT+
Sbjct: 228 VPVGRVETGIIKPGMVVTFAPQNVTTE 254
Score = 105 bits (251), Expect = 4e-23
Identities = 48/64 (75%), Positives = 54/64 (84%)
Frame = +1
Query: 511 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN 690
VKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P K A F AQVI++N
Sbjct: 255 VKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMN 314
Query: 691 HPGQ 702
HPGQ
Sbjct: 315 HPGQ 318
Score = 91.1 bits (216), Expect = 7e-19
Identities = 41/57 (71%), Positives = 47/57 (82%)
Frame = +3
Query: 90 LIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLSL 260
L+V NKMDSTEPP+SE RF EI EVS +IKKIGYNP AV FVPISG++GDNML +
Sbjct: 114 LVVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEV 170
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 154 bits (373), Expect = 7e-38
Identities = 66/87 (75%), Positives = 77/87 (88%)
Frame = +2
Query: 251 VEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGT 430
+E S+ MPWFKGW VERKEG A GK L+EALD+I+PP RPTD+PLRLPLQDVYKIGGIGT
Sbjct: 202 LEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDRPLRLPLQDVYKIGGIGT 261
Query: 431 VPVGRVETGVLKPGTIVVFAPANITTK 511
VPVGRVETG++KPG +V FAP N+TT+
Sbjct: 262 VPVGRVETGIIKPGMVVTFAPQNVTTE 288
Score = 146 bits (355), Expect = 1e-35
Identities = 70/86 (81%), Positives = 75/86 (87%)
Frame = +3
Query: 3 GTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYI 182
GTGEFEAGISKNGQTREHALLA TLGVKQLIV NKMDSTEPP+SE RF EI EVS +I
Sbjct: 119 GTGEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNEVSGFI 178
Query: 183 KKIGYNPAAVAFVPISGWHGDNMLSL 260
KKIGYNP AV FVPISG++GDNML +
Sbjct: 179 KKIGYNPKAVPFVPISGFNGDNMLEV 204
Score = 105 bits (251), Expect = 4e-23
Identities = 48/64 (75%), Positives = 54/64 (84%)
Frame = +1
Query: 511 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN 690
VKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P K A F AQVI++N
Sbjct: 289 VKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMN 348
Query: 691 HPGQ 702
HPGQ
Sbjct: 349 HPGQ 352
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 154 bits (373), Expect = 7e-38
Identities = 66/87 (75%), Positives = 77/87 (88%)
Frame = +2
Query: 251 VEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGT 430
+E S+ MPWFKGW VERKEG A GK L+EALD+I+PP RPTD+PLRLPLQDVYKIGGIGT
Sbjct: 202 LEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDRPLRLPLQDVYKIGGIGT 261
Query: 431 VPVGRVETGVLKPGTIVVFAPANITTK 511
VPVGRVETG++KPG +V FAP N+TT+
Sbjct: 262 VPVGRVETGIIKPGMVVTFAPQNVTTE 288
Score = 146 bits (355), Expect = 1e-35
Identities = 70/86 (81%), Positives = 75/86 (87%)
Frame = +3
Query: 3 GTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYI 182
GTGEFEAGISKNGQTREHALLA TLGVKQLIV NKMDSTEPP+SE RF EI EVS +I
Sbjct: 119 GTGEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNEVSGFI 178
Query: 183 KKIGYNPAAVAFVPISGWHGDNMLSL 260
KKIGYNP AV FVPISG++GDNML +
Sbjct: 179 KKIGYNPKAVPFVPISGFNGDNMLEV 204
Score = 105 bits (251), Expect = 4e-23
Identities = 48/64 (75%), Positives = 54/64 (84%)
Frame = +1
Query: 511 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN 690
VKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P K A F AQVI++N
Sbjct: 289 VKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMN 348
Query: 691 HPGQ 702
HPGQ
Sbjct: 349 HPGQ 352
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 83.8 bits (198), Expect = 1e-16
Identities = 62/150 (41%), Positives = 76/150 (50%)
Frame = +3
Query: 3 GTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYI 182
GTGEFEAGISKNGQTREHALLA TLGVKQL V+ T P S R + I++ +
Sbjct: 119 GTGEFEAGISKNGQTREHALLAQTLGVKQL---VSLRSPTRSPDSSRRSDTIQR-----L 170
Query: 183 KKIGYNPAAVAFVPISGWHGDNMLSLQPKCLGSRDGRWSVKKAKLTENASLKLSMPSCHL 362
+ +P + L C GSRDG + +K L E S +L PS H
Sbjct: 171 FHLSQSPDSTE---------TTCLRSPRTCHGSRDGLLNARKETLPERPSSRLLTPSSHH 221
Query: 363 PAPLTSPCVFPCKTYTKSVVLVPCPSAELK 452
A LT VF + T+S L P S L+
Sbjct: 222 NAQLTDHSVFHSRMCTRSEELEPSQSDVLR 251
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 82.2 bits (194), Expect = 3e-16
Identities = 36/79 (45%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
Frame = +3
Query: 9 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKK 188
GEFE G + GQTREH++L T GVK L++ VNKMD + E RF+EI+ +++ +++K
Sbjct: 223 GEFETGFDRGGQTREHSMLVKTAGVKHLVILVNKMDDPTVKWEEERFKEIEGKLTPFLRK 282
Query: 189 IGYNPAA-VAFVPISGWHG 242
+G+NP + +VP SG G
Sbjct: 283 LGFNPKTDITYVPCSGLTG 301
Score = 37.9 bits (84), Expect = 0.007
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +2
Query: 320 GKCLIEALDAILPP-ARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAP 493
G C IE +D +LP R + P+R + + Y +GTV +G++E+G ++ G +V P
Sbjct: 318 GPCFIEFIDVLLPSYKRDFNGPVRCTVAEKYS--EMGTVIIGKMESGCVQKGDTLVVMP 374
Score = 34.7 bits (76), Expect = 0.065
Identities = 21/79 (26%), Positives = 36/79 (45%)
Frame = +1
Query: 457 CVETRYHCCLCPRQHHY*VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSK 636
CV+ + P + V + + V GDN+ F +K + EL+ G++ S
Sbjct: 363 CVQKGDTLVVMPNKQPVQVLQIWADDVETERVVAGDNIKFKLKGIEENELQGGFII-CSP 421
Query: 637 NNPPKGAADFTAQVIVLNH 693
++ K F A+V+VL H
Sbjct: 422 DSLAKTGRVFDAEVLVLEH 440
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 80.6 bits (190), Expect = 1e-15
Identities = 40/84 (47%), Positives = 60/84 (71%), Gaps = 1/84 (1%)
Frame = +3
Query: 6 TGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYI- 182
TGEFE G GQT+EHALL +LGV QLIV VNK+D+ + +S+ RF+EIK +S ++
Sbjct: 283 TGEFETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQDRFDEIKNNLSVFLT 340
Query: 183 KKIGYNPAAVAFVPISGWHGDNML 254
++ G++ FVP+SG+ G+N++
Sbjct: 341 RQAGFSKP--KFVPVSGFTGENLI 362
Score = 47.6 bits (108), Expect = 9e-06
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +2
Query: 317 DGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETG-VLKPGTIVVFAP 493
DG CL+E +D+ + P P+D PLR+ + DV K+ V G++E+G V K + + +
Sbjct: 371 DGPCLLELIDSFVAPQPPSDGPLRIGISDVLKVASNQLVVSGKIESGEVEKDDKVYIMSS 430
Query: 494 ANITT 508
T
Sbjct: 431 VTAAT 435
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 80.6 bits (190), Expect = 1e-15
Identities = 40/84 (47%), Positives = 60/84 (71%), Gaps = 1/84 (1%)
Frame = +3
Query: 6 TGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYI- 182
TGEFE G GQT+EHALL +LGV QLIV VNK+D+ + +S+ RF+EIK +S ++
Sbjct: 301 TGEFETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQDRFDEIKNNLSVFLT 358
Query: 183 KKIGYNPAAVAFVPISGWHGDNML 254
++ G++ FVP+SG+ G+N++
Sbjct: 359 RQAGFSKP--KFVPVSGFTGENLI 380
Score = 47.6 bits (108), Expect = 9e-06
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +2
Query: 317 DGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETG-VLKPGTIVVFAP 493
DG CL+E +D+ + P P+D PLR+ + DV K+ V G++E+G V K + + +
Sbjct: 389 DGPCLLELIDSFVAPQPPSDGPLRIGISDVLKVASNQLVVSGKIESGEVEKDDKVYIMSS 448
Query: 494 ANITT 508
T
Sbjct: 449 VTAAT 453
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 39.1 bits (87), Expect = 0.003
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Frame = +2
Query: 272 PWFKGWQVERKEGKADGKC---LIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVG 442
P +G + EG+ D C LI+ALD++ P R +P+ I G GTV VG
Sbjct: 201 PVIRGSALSALEGQ-DISCIERLIDALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVG 259
Query: 443 RVETGVLKPG 472
+E GVLK G
Sbjct: 260 TLERGVLKKG 269
Score = 33.1 bits (72), Expect = 0.20
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +3
Query: 42 QTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFV 221
QT+EH +LA +GVK + + +NK D E E + ++ E + G+N A +
Sbjct: 148 QTKEHLILAKQVGVKNMAIFINKADLVE----EDDLDLVEMEARELLSLHGFNGDATPVI 203
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 39.1 bits (87), Expect = 0.003
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Frame = +2
Query: 272 PWFKGWQVERKEGKADGKC---LIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVG 442
P +G + EG+ D C LI+ALD++ P R +P+ I G GTV VG
Sbjct: 201 PVIRGSALSALEGQ-DISCIERLIDALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVG 259
Query: 443 RVETGVLKPG 472
+E GVLK G
Sbjct: 260 TLERGVLKKG 269
Score = 33.1 bits (72), Expect = 0.20
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +3
Query: 42 QTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFV 221
QT+EH +LA +GVK + + +NK D E E + ++ E + G+N A +
Sbjct: 148 QTKEHLILAKQVGVKNMAIFINKADLVE----EDDLDLVEMEARELLSLHGFNGDATPVI 203
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 36.7 bits (81), Expect = 0.016
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = +2
Query: 308 GKADGKCLIEALDA--ILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 472
G+ K L+E LD ++P + ++P+ + VY I G GTV G++E G+LK G
Sbjct: 226 GEEAVKQLLEVLDNKFVIPERKVNEEPM-FAAEHVYSIVGRGTVITGKLERGILKRG 281
Score = 33.9 bits (74), Expect = 0.11
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Frame = +3
Query: 42 QTREHALLAFTLGV--KQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGY 197
QTREH LLA +GV ++V +NK+D E P +E R E ++ ++ + + GY
Sbjct: 152 QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-ELVEMDIREQLNEFGY 202
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 511 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 621
+ +E + + +A PGD +G ++ + K++RRG V
Sbjct: 300 ISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 336
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 36.7 bits (81), Expect = 0.016
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = +2
Query: 308 GKADGKCLIEALDA--ILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 472
G+ K L+E LD ++P + ++P+ + VY I G GTV G++E G+LK G
Sbjct: 227 GEEAVKQLLEVLDNKFVIPERKVNEEPM-FAAEHVYSIVGRGTVITGKLERGILKRG 282
Score = 33.9 bits (74), Expect = 0.11
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Frame = +3
Query: 42 QTREHALLAFTLGV--KQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGY 197
QTREH LLA +GV ++V +NK+D E P +E R E ++ ++ + + GY
Sbjct: 153 QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-ELVEMDIREQLNEFGY 203
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 511 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 621
+ +E + + +A PGD +G ++ + K++RRG V
Sbjct: 301 ISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 337
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 36.7 bits (81), Expect = 0.016
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = +2
Query: 308 GKADGKCLIEALDA--ILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 472
G+ K L+E LD ++P + ++P+ + VY I G GTV G++E G+LK G
Sbjct: 227 GEEAVKQLLEVLDNKFVIPERKVNEEPM-FAAEHVYSIVGRGTVITGKLERGILKRG 282
Score = 33.9 bits (74), Expect = 0.11
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Frame = +3
Query: 42 QTREHALLAFTLGV--KQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGY 197
QTREH LLA +GV ++V +NK+D E P +E R E ++ ++ + + GY
Sbjct: 153 QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-ELVEMDIREQLNEFGY 203
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 511 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 621
+ +E + + +A PGD +G ++ + K++RRG V
Sbjct: 301 ISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 337
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 35.1 bits (77), Expect = 0.049
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = +1
Query: 511 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN 690
+KS+ + G + F +K + K++R+G V D K P F A+++VL+
Sbjct: 420 IKSIHRKRMPVGIVKCGQSASFALKKIPKKDVRKGMVLVDPKVKPVASMV-FEAEILVLH 478
Query: 691 HP 696
HP
Sbjct: 479 HP 480
Score = 30.7 bits (66), Expect = 1.1
Identities = 10/40 (25%), Positives = 22/40 (55%)
Frame = +2
Query: 380 PLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPAN 499
P + D+Y + G+GT+ G + +G ++ I++ P +
Sbjct: 372 PAHFQIDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTS 411
>Z82283-3|CAB05283.1| 485|Caenorhabditis elegans Hypothetical
protein T23G4.3 protein.
Length = 485
Score = 31.1 bits (67), Expect = 0.80
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Frame = +3
Query: 114 DSTEPPYSEP-RFEEIKKEVSSYIKKIGYNPAAVAFV--PISGWHGDNMLSLQPKCLGSR 284
D TE + P +++E++KE+ + + + AA A P+ + LS+ K + R
Sbjct: 78 DCTEGAEATPEQWKELEKELDKVVAFMKDSEAAKATETDPVKRYKNLCQLSMTLKIMSPR 137
Query: 285 DGRWSVKKAKLTENASLKL 341
DG W + K TE L +
Sbjct: 138 DGGWKILHDKRTEAEQLAI 156
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 30.7 bits (66), Expect = 1.1
Identities = 10/40 (25%), Positives = 22/40 (55%)
Frame = +2
Query: 380 PLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPAN 499
P + D+Y + G+GT+ G + +G ++ I++ P +
Sbjct: 373 PAHFQIDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTS 412
>AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical
protein H30A04.1b protein.
Length = 810
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 172 PHTSRRLATTQLLSLSCPFLD 234
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical
protein H30A04.1a protein.
Length = 808
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 172 PHTSRRLATTQLLSLSCPFLD 234
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein.
Length = 810
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 172 PHTSRRLATTQLLSLSCPFLD 234
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein.
Length = 808
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 172 PHTSRRLATTQLLSLSCPFLD 234
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 28.7 bits (61), Expect = 4.3
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Frame = +3
Query: 42 QTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGY--NPAAVA 215
QT EH LLA ++I+ +NK D E + + E K+V +K +G N V
Sbjct: 112 QTAEHLLLASKFCPNRVIIVLNKCDLAE----KSKISESAKKVRKGLKSMGVDENSPIVE 167
Query: 216 FVPISGWHGDNMLSLQPKCLGSR 284
G+ + ML + SR
Sbjct: 168 MSLADGYFKEEMLQNLKLAIESR 190
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +2
Query: 350 ILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPAN 499
I P R + + + + I G GTV G V GVL+ T + F N
Sbjct: 191 IFEPKRDEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEFPALN 240
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = +1
Query: 511 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN 690
V S+ +A+ PG+ ++ LRRG V + + PP +FTA +++L
Sbjct: 450 VGSIRRSRQAVGCVNPGEAASISLNLPDGVSLRRGMVLAEIDHQPPV-CYEFTANLLLLC 508
Query: 691 H 693
H
Sbjct: 509 H 509
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +2
Query: 350 ILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPAN 499
I P R + + + + I G GTV G V GVL+ T + F N
Sbjct: 150 IFEPKRDEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEFPALN 199
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = -3
Query: 677 T*AVKSAAPLGGLFLESPAT*PRRNSLTDTFFTLKPTLSPGTAS 546
T A +AAP GGLF + T P T F T +P TA+
Sbjct: 468 TTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAATTTTPATAA 511
>Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical
protein W05B2.2 protein.
Length = 1278
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -2
Query: 309 PSLRSTCHPLNQGILVEGSTCCLRAIQKWARKRQQLGCSQ 190
PS TC NQG+ V G+TC L +Q+W C+Q
Sbjct: 502 PSRELTC---NQGLQV-GTTCGLSTLQRWYYDPLHNRCNQ 537
>Z70205-2|CAA94116.1| 529|Caenorhabditis elegans Hypothetical
protein C11H1.3 protein.
Length = 529
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -2
Query: 480 TMVPGFNTPVSTLPTGTVPIPPILYTSCRGRRRGLSVGRAGGRM 349
++V G N + +PT T P+ P + +S R +R S G M
Sbjct: 332 SLVEGLNGSPTPIPTVTDPVNPTVNSSTRRKRHSSSKSSNGKSM 375
>AL132864-2|CAB60592.1| 201|Caenorhabditis elegans Hypothetical
protein Y53H1A.3 protein.
Length = 201
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Frame = -1
Query: 511 LSSDVGGGKDNNGTWF--QHTS---FNSADGHGTNTTDFVY 404
+S +V GK ++G W Q TS F DGH T T V+
Sbjct: 96 VSLNVAAGKTHSGVWLGAQRTSATAFRWTDGHTTGTEAMVF 136
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -1
Query: 109 LFTPTMSCLTPRVKASKACSRV*PFLEIPASNSPVP 2
LF PT+SC+ + AS S P + PA N VP
Sbjct: 13 LFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVP 47
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,288,392
Number of Sequences: 27780
Number of extensions: 423655
Number of successful extensions: 1334
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1329
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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