Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00794
(741 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 82 7e-17
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 51 2e-07
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 49 8e-07
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 44 2e-05
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 29 0.92
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 28 1.2
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 27 2.1
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 27 2.1
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 27 3.7
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 26 4.9
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 26 6.5
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom... 25 8.6
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|... 25 8.6
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 82.2 bits (194), Expect = 7e-17
Identities = 32/74 (43%), Positives = 41/74 (55%)
Frame = +3
Query: 261 GHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQT 440
GH AR+C + CY CN TGH A EC + E +CY C GH+ R+CP
Sbjct: 26 GHQARECTK-GSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAE 84
Query: 441 CYNCNKSGHISRNC 482
CY C + GHI+R+C
Sbjct: 85 CYKCGRVGHIARDC 98
Score = 76.2 bits (179), Expect = 5e-15
Identities = 37/97 (38%), Positives = 50/97 (51%), Gaps = 13/97 (13%)
Frame = +3
Query: 255 RTGHFARDCKE--EADRCYRCNGTGHIARECAQSPDE---PSCYNCNKTGHIARNCPEGG 419
+TGH A +C E + CY C GH+ R+C SP+ CY C + GHIAR+C G
Sbjct: 43 QTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNG 102
Query: 420 RES--------ATQTCYNCNKSGHISRNCPDGTKTCY 506
++S + CY C GH +R+C G K CY
Sbjct: 103 QQSGGRFGGHRSNMNCYACGSYGHQARDCTMGVK-CY 138
Score = 71.3 bits (167), Expect = 1e-13
Identities = 31/63 (49%), Positives = 38/63 (60%)
Frame = +3
Query: 297 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISR 476
RCY C GH AREC + CYNCN+TGH A C E +E +TCY C +GH+ R
Sbjct: 18 RCYNCGENGHQARECTKGS---ICYNCNQTGHKASECTEPQQE---KTCYACGTAGHLVR 71
Query: 477 NCP 485
+CP
Sbjct: 72 DCP 74
Score = 63.3 bits (147), Expect = 3e-11
Identities = 34/95 (35%), Positives = 43/95 (45%), Gaps = 13/95 (13%)
Frame = +3
Query: 237 EVLQVQRTGHFARDCKEEADR-------------CYRCNGTGHIARECAQSPDEPSCYNC 377
E + R GH ARDC+ + CY C GH AR+C CY+C
Sbjct: 84 ECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGV---KCYSC 140
Query: 378 NKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 482
K GH + C + S Q CY CN+ GHI+ NC
Sbjct: 141 GKIGHRSFECQQA---SDGQLCYKCNQPGHIAVNC 172
Score = 55.2 bits (127), Expect = 9e-09
Identities = 24/51 (47%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +3
Query: 360 PSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC--PDGTKTCY 506
P CYNC + GH AR C +G CYNCN++GH + C P KTCY
Sbjct: 17 PRCYNCGENGHQARECTKG------SICYNCNQTGHKASECTEPQQEKTCY 61
Score = 40.7 bits (91), Expect = 2e-04
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +1
Query: 115 SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDS-GFNRQREKCFKCNA 258
S P + CYKC R GH AR+C G S G +R C+ C +
Sbjct: 75 SSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGS 123
Score = 35.9 bits (79), Expect = 0.006
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +1
Query: 139 SVCYKCNRTGHFARECTQ 192
S+CY CN+TGH A ECT+
Sbjct: 36 SICYNCNQTGHKASECTE 53
Score = 34.7 bits (76), Expect = 0.014
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +1
Query: 145 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNAQDT 267
CY C GH ARECT+G + + + +C + + T
Sbjct: 19 CYNCGENGHQARECTKGSICYNCNQTGHKASECTEPQQEKT 59
Score = 31.9 bits (69), Expect = 0.099
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 127 AMSSSVCYKCNRTGHFARECT 189
A +CYKCN+ GH A CT
Sbjct: 153 ASDGQLCYKCNQPGHIAVNCT 173
Score = 30.3 bits (65), Expect = 0.30
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 10/51 (19%)
Frame = +1
Query: 133 SSSVCYKCNRTGHFARECTQG------GVVSRDSGFNRQR----EKCFKCN 255
S+ CY C GH AR+CT G G + S F Q+ + C+KCN
Sbjct: 114 SNMNCYACGSYGHQARDCTMGVKCYSCGKIGHRS-FECQQASDGQLCYKCN 163
Score = 29.5 bits (63), Expect = 0.53
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = +1
Query: 103 AQEFSKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKC 252
A E ++P CY C GH R+C S RQ +C+KC
Sbjct: 48 ASECTEP--QQEKTCYACGTAGHLVRDCP-------SSPNPRQGAECYKC 88
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 464 PHLPQLSRRHQDVLRCGKPGHISREC 541
P +PQ +R CG+ GH +REC
Sbjct: 7 PTVPQTTRPGPRCYNCGENGHQAREC 32
Score = 26.2 bits (55), Expect = 4.9
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +2
Query: 485 RRHQDVLRCGKPGHISREC 541
R+ + +CG+ GHI+R+C
Sbjct: 80 RQGAECYKCGRVGHIARDC 98
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 51.2 bits (117), Expect = 2e-07
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +3
Query: 300 CYRCNGTGHIARECAQSPDEPS-CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISR 476
C+ C GHI ++C ++ D S C+ C H C + G + C+ C+++GH+S
Sbjct: 79 CFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSKKGPLKFAK-CFICHENGHLSG 137
Query: 477 NCPDGTKTCY 506
C K Y
Sbjct: 138 QCEQNPKGLY 147
Score = 46.0 bits (104), Expect = 6e-06
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Frame = +3
Query: 252 QRTGHFARDCKEEADR---CYRCNGTGHIARECA-QSPDE-PSCYNCNKTGHIARNCPEG 416
++ GH +DC E D C+RC H C+ + P + C+ C++ GH++ C +
Sbjct: 83 RQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSKKGPLKFAKCFICHENGHLSGQCEQN 142
Query: 417 --GRESATQTCYNCNKSGHISRNCPDGTK 497
G C C+ H++++C K
Sbjct: 143 PKGLYPKGGCCKFCSSVHHLAKDCDQVNK 171
Score = 34.7 bits (76), Expect = 0.014
Identities = 14/50 (28%), Positives = 21/50 (42%)
Frame = +3
Query: 333 RECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 482
R Q + C+ C + GHI ++CPE + C+ C H C
Sbjct: 68 RRINQRNRDKFCFACRQQGHIVQDCPEA--KDNVSICFRCGSKEHSLNAC 115
Score = 33.9 bits (74), Expect = 0.024
Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Frame = +3
Query: 297 RCYRCNGTGHIARECAQSPD--EPS---CYNCNKTGHIARNCPEGGRESAT 434
+C+ C+ GH++ +C Q+P P C C+ H+A++C + ++ +
Sbjct: 125 KCFICHENGHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDCDQVNKDDVS 175
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 48.8 bits (111), Expect = 8e-07
Identities = 30/99 (30%), Positives = 40/99 (40%), Gaps = 16/99 (16%)
Frame = +3
Query: 237 EVLQVQRTGHFARDCKEEADRCYRCNGTGHIAREC----------------AQSPDEPSC 368
E V R +F D E+ C+ C G GHI+++C + P C
Sbjct: 69 EWADVSRGRYFGSD-PSESIVCHNCKGNGHISKDCPHVLCTTCGAIDDHISVRCPWTKKC 127
Query: 369 YNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCP 485
NC GHIA C E R+ + C C+ H S CP
Sbjct: 128 MNCGLLGHIAARCSE-PRKRGPRVCRTCHTDTHTSSTCP 165
Score = 34.3 bits (75), Expect = 0.019
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 13/57 (22%)
Frame = +3
Query: 366 CYNCNKTGHIARNCPE-------------GGRESATQTCYNCNKSGHISRNCPDGTK 497
C+NC GHI+++CP R T+ C NC GHI+ C + K
Sbjct: 89 CHNCKGNGHISKDCPHVLCTTCGAIDDHISVRCPWTKKCMNCGLLGHIAARCSEPRK 145
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 44.0 bits (99), Expect = 2e-05
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 366 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCP 485
C NC GH +CPE + C +C GHI+R+CP
Sbjct: 311 CQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCP 350
Score = 29.9 bits (64), Expect = 0.40
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Frame = +3
Query: 261 GHFARDCKEEADR-----CYRCNGTGHIARECAQSPDEP 362
GH DC E + C C GHIAR+C +P
Sbjct: 318 GHRRFDCPERINHTMNIVCRHCGSIGHIARDCPVRDQQP 356
Score = 27.5 bits (58), Expect = 2.1
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +3
Query: 420 RESATQTCYNCNKSGHISRNCPD 488
R+ Q C NC GH +CP+
Sbjct: 304 RDDENQVCQNCGNVGHRRFDCPE 326
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 28.7 bits (61), Expect = 0.92
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Frame = +3
Query: 402 NCPEGGRESATQTCYN----CNKSGHISRNCP 485
+CP+G E T C+N C +G+IS P
Sbjct: 66 DCPDGSDEPGTSACHNGKFFCKNTGYISSYIP 97
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 28.3 bits (60), Expect = 1.2
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = +3
Query: 417 GRESATQTCYNCNKSGHISRN--CP 485
GR+ T+ C NC + GH+ N CP
Sbjct: 939 GRKPTTRKCSNCGQVGHMKTNKICP 963
Score = 25.8 bits (54), Expect = 6.5
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +3
Query: 345 QSPDEPSCYNCNKTGHIARN--CPEGGR 422
+ P C NC + GH+ N CP GR
Sbjct: 940 RKPTTRKCSNCGQVGHMKTNKICPLFGR 967
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.5 bits (58), Expect = 2.1
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +1
Query: 139 SVCYKCNRTGHFAREC 186
S CYKC + H REC
Sbjct: 1804 STCYKCGKADHNLREC 1819
Score = 27.1 bits (57), Expect = 2.8
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = +3
Query: 264 HFARDCKEEADRCYRCNGTGHIAREC 341
H + C CY+C H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.5 bits (58), Expect = 2.1
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +1
Query: 139 SVCYKCNRTGHFAREC 186
S CYKC + H REC
Sbjct: 1804 STCYKCGKADHNLREC 1819
Score = 27.1 bits (57), Expect = 2.8
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = +3
Query: 264 HFARDCKEEADRCYRCNGTGHIAREC 341
H + C CY+C H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 26.6 bits (56), Expect = 3.7
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Frame = -1
Query: 450 SYSRSASQTPAPPRDSSVRCGPSCCSCNTTARPGSVRTRALCA-----PCRYICSNGQPL 286
S S ++S TP P SS+ P+ S TTA+ ++ LC Y C N Q
Sbjct: 843 SSSTTSSITPTPTTTSSITPTPTTTSTTTTAQSTGMQ---LCGSNYYDASSYYCDNDQLC 899
Query: 285 P 283
P
Sbjct: 900 P 900
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Frame = +3
Query: 333 RECAQSPDEPS-----CYNCNKTGHIARNCP 410
R A PD+P CY C + GH + CP
Sbjct: 169 RIAASVPDKPPPPGYICYRCGQKGHWIQACP 199
Score = 25.4 bits (53), Expect = 8.6
Identities = 6/15 (40%), Positives = 11/15 (73%)
Frame = +1
Query: 142 VCYKCNRTGHFAREC 186
+CY+C + GH+ + C
Sbjct: 184 ICYRCGQKGHWIQAC 198
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 25.8 bits (54), Expect = 6.5
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -2
Query: 725 YKSTVEPHSSVCGADAALHLYCNRLSCVARGVL 627
Y +T EP ++ GA+ L + R +A+G+L
Sbjct: 50 YDNTWEPEQNLFGAEKVLKKWKKRKKLIAKGLL 82
>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 25.4 bits (53), Expect = 8.6
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3
Query: 414 GGRESATQTCYNCNKSG 464
GG+E + ++C +CN SG
Sbjct: 144 GGKEGSVKSCASCNGSG 160
>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 461
Score = 25.4 bits (53), Expect = 8.6
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -1
Query: 450 SYSRSASQTPAPPRDSSVRCGPSCCSCN 367
+YS + T APP SS G SC +CN
Sbjct: 417 TYSPTTLSTNAPPSPSS---GRSCSNCN 441
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,721,089
Number of Sequences: 5004
Number of extensions: 52582
Number of successful extensions: 217
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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