Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00793
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    32   0.11 
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    29   0.58 
SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein Pvg5|Schizos...    28   1.3  
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    28   1.3  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    27   3.1  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    27   4.1  
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|...    26   5.4  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    26   7.2  
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S...    25   9.5  

>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = -3

Query: 600 MQ*NLFINLIKYNNIKIPCFILQNKQFHRMVYKYS*RHEIMVNHLDACEELLNAIKSIYK 421
           M  N F+N   + +IK   F  + K +   +Y Y+       N LD  E+ LN++ + YK
Sbjct: 208 MNQNSFLNNFNFEHIKAD-FAFRQKNYEESIYLYARLLIKFPNRLDYSEKYLNSLWNFYK 266


>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 475 HHYLMPS*ILVHHSVKLFILENKTRNFNIVIFNQIYKEI 591
           HHYL+P   + +H +    LE+    F+++I   ++ EI
Sbjct: 82  HHYLIPDSNIFYHCID--ALEHPNNFFDVIILQTVFSEI 118


>SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein
           Pvg5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 16/47 (34%), Positives = 28/47 (59%)
 Frame = -2

Query: 442 CNKIYL*IGLNITIQKTLVFYSHYMNIQKLPKTESEHPTFHMVLSAL 302
           C +++L  G  I + + L+FYS+      + K ++E+P +H  LSAL
Sbjct: 17  CLRLFL-FGSLILLLRPLIFYSN----TTMKKLKTEYPIYHRHLSAL 58


>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 589

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 10/38 (26%), Positives = 24/38 (63%)
 Frame = -3

Query: 549 PCFILQNKQFHRMVYKYS*RHEIMVNHLDACEELLNAI 436
           P  +LQN++FH+++ +   +HE  +  ++A ++ L  +
Sbjct: 347 PASLLQNEEFHKLIEERQRQHEERLKRINANKKALEEL 384


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
            Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 582  INLIKYNNIKIPCFILQNKQFHRMVYKYS*RHEIMVNHLDA 460
            + L K N   I   +L   +F +M Y+YS   E++V H+ A
Sbjct: 1219 LELEKENEFTIGQKLLVKGRFEKMTYQYSDLDELIVLHIKA 1259


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -3

Query: 150 RASAPKGGRAALPAAPEIIQNQTRWGERRSPLSVNNAI 37
           R  A + GR AL  +  + +N TR+    +P+SV ++I
Sbjct: 104 RRPAGRRGRPALNTSNSLERNGTRYVSAEAPISVKSSI 141


>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 612

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 663 SVKLFILLLSKYEFICWVTLILLLHGLSMPRKPNNTLSNNL*VM 794
           S++  + L +    + W  L     G+ +P++ NNT  NN  VM
Sbjct: 130 SLQEIVYLTNMQPNVSWNVLQEPTRGIKVPKESNNTQQNNQFVM 173


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +3

Query: 573  SNL*RDFIAFNNSS*ASKWFTYTSMKTHTTSVKLFILLLSKYEFICWVTLILLLHGLS 746
            SNL R  + F+N + +SKW    S        +L +  L +         +LLL GLS
Sbjct: 1612 SNLLRLAMGFHNQNSSSKWDVEISSLRKFCVKELLLSYLGEGSLAAMFYSLLLLEGLS 1669


>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 585 FINLIKYNNIKIPCFILQN 529
           F+  +  N++KIPCFIL +
Sbjct: 307 FVGGVLENHLKIPCFILHS 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,628,629
Number of Sequences: 5004
Number of extensions: 79631
Number of successful extensions: 192
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)