Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00793
         (797 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14570| Best HMM Match : Mab-21 (HMM E-Value=0.00069)                30   1.9  
SB_3702| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.3  
SB_42838| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-39)                 29   4.4  
SB_24914| Best HMM Match : Nuc_sug_transp (HMM E-Value=3.6e-15)        29   5.8  

>SB_14570| Best HMM Match : Mab-21 (HMM E-Value=0.00069)
          Length = 639

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = -1

Query: 299 PNVYIKTGGAE*ERPRPV*QSVGTIRGRADEAGC*MRPTSRNFRAGHELTVLQHPK 132
           P+V+ + G     RPRP    +  +     E GC + P  R  R G  LT+ Q+ K
Sbjct: 176 PDVWPEPGMDWLVRPRPGGWPLPELIQEIVELGCHLAPVGRGKRTGKTLTIFQYKK 231


>SB_3702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +3

Query: 102 PALREEQPFRLWVLKHGQLMTSSEVSAGWSHSASSLICSTSYGTHTLSH 248
           PA+  +QP+          +  S+ +  W+ S ++ IC+  YG H + H
Sbjct: 48  PAVYSQQPYYGPPTTQQTFVQVSKAAILWTTSNTTNICTGQYGNHNMDH 96


>SB_42838| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-39)
          Length = 747

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 174 VSAGWSHSASSLICSTSYGTHTLSHWAGPLSLRAS 278
           ++ GW HS +  + +T  G HTL++ A P+ L  +
Sbjct: 57  LTEGWCHSVNVRLTATKSGRHTLTN-AAPIKLHVT 90


>SB_24914| Best HMM Match : Nuc_sug_transp (HMM E-Value=3.6e-15)
          Length = 979

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = +3

Query: 591 FIAFNNSS*ASKWFTYTSMKTHTTSVKLFILLLSKYEFICWVTLILLLHGLS 746
           ++A +N   A+   TY  +K  TT++    +L  K   I W  LILL+ G++
Sbjct: 281 YVALSNLDAATYQVTY-QLKILTTALFSVAMLSKKLSSIKWFALILLMAGVA 331


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,289,396
Number of Sequences: 59808
Number of extensions: 555070
Number of successful extensions: 1403
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1397
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)