Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00793
         (797 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79756-6|CAB02117.3|  693|Caenorhabditis elegans Hypothetical pr...    30   2.2  
U41010-5|AAV28334.1|  975|Caenorhabditis elegans Hypothetical pr...    30   2.2  
U41010-4|AAV28333.1| 1622|Caenorhabditis elegans Hypothetical pr...    30   2.2  
U23486-8|AAC46779.3| 1025|Caenorhabditis elegans Nmda class glut...    28   8.9  
AF318613-1|AAK01101.2| 1025|Caenorhabditis elegans NMDA-type ion...    28   8.9  

>Z79756-6|CAB02117.3|  693|Caenorhabditis elegans Hypothetical
           protein F53C11.2 protein.
          Length = 693

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +3

Query: 132 LWVLKHGQLMTSSEVSAGWSHSASSLICSTSYGTHTLSHWAGPL 263
           LWV   G L+TS+    GWS   S +I +  YG      W GP+
Sbjct: 551 LWVFTKG-LLTSNFSKVGWSFFVSWVIIANHYG------WGGPI 587


>U41010-5|AAV28334.1|  975|Caenorhabditis elegans Hypothetical protein
            T05A12.4b protein.
          Length = 975

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = -2

Query: 283  KPEARSESGPAQCDRVWVPYEVEQMRLDAECDQPAETSELVMS*PCFSTQ 134
            K E        + + +  P + ++ RLD E +   ET+E   + PC STQ
Sbjct: 854  KSERNGRVNEREIEEITRPKDAKRSRLDVEEEDEMETNEEKSNTPCSSTQ 903


>U41010-4|AAV28333.1| 1622|Caenorhabditis elegans Hypothetical protein
            T05A12.4a protein.
          Length = 1622

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = -2

Query: 283  KPEARSESGPAQCDRVWVPYEVEQMRLDAECDQPAETSELVMS*PCFSTQ 134
            K E        + + +  P + ++ RLD E +   ET+E   + PC STQ
Sbjct: 854  KSERNGRVNEREIEEITRPKDAKRSRLDVEEEDEMETNEEKSNTPCSSTQ 903


>U23486-8|AAC46779.3| 1025|Caenorhabditis elegans Nmda class
           glutamate receptor protein1 protein.
          Length = 1025

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 271 APPVFIYTLGVGQTRPCGKLDALIQFWVIF 360
           A P F+YT  +G    C +L   +  W IF
Sbjct: 403 ADPPFVYTTPIGSPSQCAELGNTVVEWSIF 432


>AF318613-1|AAK01101.2| 1025|Caenorhabditis elegans NMDA-type
           ionotropic glutamatereceptor NMR-1 protein.
          Length = 1025

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 271 APPVFIYTLGVGQTRPCGKLDALIQFWVIF 360
           A P F+YT  +G    C +L   +  W IF
Sbjct: 403 ADPPFVYTTPIGSPSQCAELGNTVVEWSIF 432


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,876,607
Number of Sequences: 27780
Number of extensions: 441625
Number of successful extensions: 1133
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)