Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00793
         (797 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    27   0.15 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.9  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   1.9  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   3.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   4.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.7  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    22   7.6  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   7.6  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 27.5 bits (58), Expect = 0.15
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 179 GWLVAFSIQPHLLYLVWYPH 238
           G+L+A  +QP L++ +W PH
Sbjct: 162 GFLLAGIVQPFLIHWIWTPH 181


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -2

Query: 442 CNKIYL*IGLNITIQKTLVFYS 377
           C++ YL I  NIT+++  +FY+
Sbjct: 227 CDEPYLDITFNITMRRKTLFYT 248


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -2

Query: 442 CNKIYL*IGLNITIQKTLVFYS 377
           C++ YL I  NIT+++  +FY+
Sbjct: 227 CDEPYLDITFNITMRRKTLFYT 248


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -2

Query: 442 CNKIYL*IGLNITIQKTLVFYS 377
           C++ YL I  NIT+++  +FY+
Sbjct: 223 CDEPYLDITFNITMRRKTLFYT 244


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -2

Query: 412 NITIQKTLVFYSHYMNIQKLPKTESEHPTFHMVLSALLLMY 290
           N+T+     + S+Y  I  L    +  PT+   L    LMY
Sbjct: 628 NVTLSTKCPYPSYYSYIGVLTLVATSMPTYICYLGKAYLMY 668


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 197 SIQPHLLYLVWY 232
           S+ P +LYL WY
Sbjct: 803 SVIPRILYLTWY 814


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/34 (29%), Positives = 13/34 (38%)
 Frame = +3

Query: 147  HGQLMTSSEVSAGWSHSASSLICSTSYGTHTLSH 248
            HG L          SH    L+C  +Y  +  SH
Sbjct: 1445 HGNLDELQLSRHATSHELKGLLCGNTYQLYLTSH 1478


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/34 (29%), Positives = 13/34 (38%)
 Frame = +3

Query: 147  HGQLMTSSEVSAGWSHSASSLICSTSYGTHTLSH 248
            HG L          SH    L+C  +Y  +  SH
Sbjct: 1441 HGNLDELQLSRHATSHELKGLLCGNTYQLYLTSH 1474


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 447 LNAIKSIYKLD*I*QYKKLSCF 382
           L+ +KS+Y+ +   Q KKL CF
Sbjct: 34  LSDLKSMYESNSEEQMKKLGCF 55


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -3

Query: 132 GGRAALPAAPEIIQNQTRWGERRSPLS 52
           GG    P    I+ ++  W ER  P+S
Sbjct: 58  GGVQVSPVQENIVIDKRPWWERYQPIS 84


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 246,747
Number of Sequences: 438
Number of extensions: 5692
Number of successful extensions: 24
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)