Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00792
(739 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 33 0.056
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 30 0.30
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 30 0.40
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 29 0.69
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 29 0.91
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 2.1
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c... 27 2.1
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 27 2.1
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 27 2.1
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M... 27 3.7
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa... 27 3.7
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac... 26 4.9
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 26 4.9
SPAC3H5.04 |aar2||U5 snRNP-associated protein Aar2|Schizosacchar... 26 4.9
SPAC25B8.15c |||wybutosine biosynthesis protein Tyw3|Schizosacch... 26 4.9
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 26 4.9
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 8.5
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 32.7 bits (71), Expect = 0.056
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Frame = +1
Query: 7 PGTQPSTSSIKELFNTSSNLNSTRYHTHKKLFTSLV*KFPTSKSTKWSH---SLTISTSM 177
P T PST+SI E T STR +H + + P SK T H S T T+
Sbjct: 134 PTTFPSTTSITENLPTIDPTRSTRSSSHIQSLS------PESKQTSDGHRPPSPTSITTT 187
Query: 178 PSTLSTSVKKNSRALLTVTRS 240
+++ SV +S++ L TR+
Sbjct: 188 STSIDPSVAFSSKSTLATTRT 208
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 30.3 bits (65), Expect = 0.30
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = +1
Query: 13 TQPSTSSIKELFNTSSNLNSTRYHTHKKLFTSLV*KF-PTSKSTKWSHSLTISTSMPSTL 189
T S+SS + ++SS+ +S+ T + +S PTS S+ S S + S+S STL
Sbjct: 262 TASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTL 321
Query: 190 STSVKKNS 213
S+S +S
Sbjct: 322 SSSSMSSS 329
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 29.9 bits (64), Expect = 0.40
Identities = 23/78 (29%), Positives = 43/78 (55%)
Frame = +1
Query: 22 STSSIKELFNTSSNLNSTRYHTHKKLFTSLV*KFPTSKSTKWSHSLTISTSMPSTLSTSV 201
S+SSI F++ S++ S+ + S+ +S ST + S + STS PS++S+S+
Sbjct: 565 SSSSIPSTFSSVSSILSSSTSSPSSTSLSI-----SSSSTSSTFS-SASTSSPSSISSSI 618
Query: 202 KKNSRALLTVTRSVNHVL 255
+S L + T S + ++
Sbjct: 619 SSSSTILSSPTPSTSSLM 636
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 29.1 bits (62), Expect = 0.69
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 616 VFVYPYEPTPKESEPFKSVVPDNKPFGYP 702
+ VY + P +SE F +VV DN YP
Sbjct: 4194 ILVYQHLPDSSQSETFLNVVTDNSAVDYP 4222
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 28.7 bits (61), Expect = 0.91
Identities = 19/72 (26%), Positives = 40/72 (55%)
Frame = +1
Query: 52 TSSNLNSTRYHTHKKLFTSLV*KFPTSKSTKWSHSLTISTSMPSTLSTSVKKNSRALLTV 231
TSS+L++ + K+L++ FP T+ + + + S+S+PS S+S + ++
Sbjct: 80 TSSSLSTRKRWRQKRLWSFK--NFPFRPPTRLTSTPSNSSSLPSIPSSSSTPSISSIPHT 137
Query: 232 TRSVNHVLPQAV 267
T SV++ +P +
Sbjct: 138 TSSVSNDIPSVL 149
>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 368
Score = 27.5 bits (58), Expect = 2.1
Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Frame = +1
Query: 10 GTQPSTSSIKELFNTSSNLNSTRYHTHKKLFTSLV*KFPTSKSTKWSHSLTISTSMP--- 180
G+Q STS + +T+S L+S+ +H+ + PT S +S++ + S+P
Sbjct: 144 GSQASTSLLHPRRSTTSLLSSSAHHSRSSYYDLAT---PTRSS--FSYNTVGAASLPSGG 198
Query: 181 -STLSTSVKKNSRA 219
S LS+S++ +S++
Sbjct: 199 LSNLSSSLRSSSKS 212
>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 581
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Frame = +2
Query: 314 VKMFLGPKYDENGFPFSLEDNWMNFY----ELDWFVQKVNPGQSQI 439
+++FL P +G + +D W++FY E DW N G + +
Sbjct: 338 LRIFLFPAVLYSGLQWGAQDAWLSFYLTTEEEDWMEAPYNYGDNAV 383
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 27.5 bits (58), Expect = 2.1
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = +1
Query: 13 TQPSTSSIKELFNTSSNLNSTRYHTHKKLFTSLV*KFPTSKSTKWSHSLTISTSMPSTLS 192
T +TS I + ++ S Y+T L +S++ S S+ S+ STS P T+S
Sbjct: 201 TITNTSMIPSSSSFTTTTGSPYYNTSSFLPSSVISSASLSSSSVLPTSIITSTSTPVTVS 260
Query: 193 TS 198
+S
Sbjct: 261 SS 262
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 27.5 bits (58), Expect = 2.1
Identities = 23/74 (31%), Positives = 42/74 (56%)
Frame = +1
Query: 13 TQPSTSSIKELFNTSSNLNSTRYHTHKKLFTSLV*KFPTSKSTKWSHSLTISTSMPSTLS 192
+ PS+SS K ++SS+ +S+ + K +S +SKS+ S S + S++ PS+
Sbjct: 163 SSPSSSSSK---SSSSSKSSSSSSSSSKSSSS---SSSSSKSSSSSSSSSKSSASPSSSK 216
Query: 193 TSVKKNSRALLTVT 234
+S K +S + +T T
Sbjct: 217 SSSKFSSSSFITST 230
>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 342
Score = 26.6 bits (56), Expect = 3.7
Identities = 9/34 (26%), Positives = 15/34 (44%)
Frame = +2
Query: 398 DWFVQKVNPGQSQITRSSTDFAFFKEDSLPMAEI 499
DW + K+ P ++T D FF + P +
Sbjct: 82 DWVIVKLGPSSGRVTGCEIDTTFFNGNHAPEVSV 115
>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
Trk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 841
Score = 26.6 bits (56), Expect = 3.7
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 404 FVQKVNPGQSQITRSSTDFAFFKEDSLPMAEIY 502
F+ VNP ++ TR + ++SLPMA Y
Sbjct: 258 FISSVNPLEADDTRETLSEGALVQESLPMAYSY 290
>SPAC1751.01c |gti1||gluconate transporter inducer
Gti1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +2
Query: 221 SSRLQGPSTTSYHKPFTVTIDIKSDVATNAVVKMFLGPKYDENGFPFS 364
SS+ + S FTV++ + DVA++ + P +N FP S
Sbjct: 100 SSKSRSDSDEEEVSAFTVSVPVDVDVASHVNISSPSAPSLSDNLFPGS 147
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 26.2 bits (55), Expect = 4.9
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = -3
Query: 704 NG*PNGLLSGTTDLNGSDSLGVGSYG*TNTNSWKGNPSYVPLGSISLEGIVSEELNMSVG 525
+G + L + + N +++ G+Y N NS N + S SL+G+ S LN S G
Sbjct: 550 SGMASSFLGSSGNNNNNNNSNSGNYN--NNNSGNNNQQHQQSSS-SLQGLASSFLNSSSG 606
>SPAC3H5.04 |aar2||U5 snRNP-associated protein
Aar2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 346
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +2
Query: 257 HKPFTVTIDIKSDVATNAVVKMFLGPKYDENGFPFSLEDNW 379
H+ +ID S T ++ K L YDEN +PF +W
Sbjct: 58 HEDMKYSIDFDSKSETASLQK--LDVLYDENFYPFESTKDW 96
>SPAC25B8.15c |||wybutosine biosynthesis protein
Tyw3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 237
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 655 EPFKSVVPDNKPFGYPFDRPVLP 723
E KS VPD P G+P D P+ P
Sbjct: 19 EGLKSSVPDASPKGHP-DSPIFP 40
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 26.2 bits (55), Expect = 4.9
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Frame = +1
Query: 7 PGTQPSTSSIKE--LFNTSS----NLNSTRYHTHKKLFTSLV*KFPTSKSTKWSHSLTIS 168
P + PS +S+ E L SS + S R + F S K P+S S S++ +
Sbjct: 571 PSSNPSQASLTEESLSTRSSPTKPSTTSLRSQSLVNRFASSTLKAPSSSSKGVSNAASSK 630
Query: 169 TSMPSTLSTSVKKNSRALLT 228
S PS+ S S K + L T
Sbjct: 631 QSFPSSPSISKKLETSRLST 650
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.4 bits (53), Expect = 8.5
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +1
Query: 13 TQPSTSSIKELFNTSSNLNSTRYHTHKKLFTSLV*KFPTSKSTKWSHSLTISTS-MPSTL 189
T PS+SS ++SS+ +S+ + +S +S S+ S S + S+S +P T
Sbjct: 153 TSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITS 212
Query: 190 STSVKKNS 213
STS +S
Sbjct: 213 STSSSHSS 220
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,986,348
Number of Sequences: 5004
Number of extensions: 62472
Number of successful extensions: 240
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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