Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00792
(739 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1457 - 33741048-33741146,33741647-33741760,33741938-337420... 34 0.14
02_05_0008 + 24934917-24935229,24936387-24936608,24936876-249375... 29 3.9
11_05_0063 - 18756289-18756390,18756769-18756954,18757053-187572... 29 5.1
09_06_0134 + 21065104-21065965,21066732-21066961,21067618-210678... 29 5.1
04_03_0658 + 18447986-18448117,18448204-18448317,18448388-184485... 29 5.1
09_03_0177 - 13120816-13120941,13121032-13121137,13121231-131213... 28 6.7
03_05_0787 + 27696347-27696708,27696851-27696857,27697066-276973... 28 6.7
03_01_0510 + 3841630-3844089,3844235-3844358,3844641-3844786,384... 28 8.9
01_03_0216 + 13870364-13870472,13871406-13871477,13871603-138716... 28 8.9
>04_04_1457 -
33741048-33741146,33741647-33741760,33741938-33742052,
33742154-33742560,33743342-33743476,33743576-33743970,
33744225-33744916,33745014-33745097,33745195-33745286,
33745374-33745457,33745535-33745714,33746258-33746302,
33746399-33746692,33747199-33747585,33747713-33747899,
33748042-33748118,33748936-33749067,33749315-33749416,
33749744-33749827,33749902-33749992,33750105-33750178,
33750644-33750664,33751433-33751477,33752427-33752561,
33752693-33752752
Length = 1376
Score = 33.9 bits (74), Expect = 0.14
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -3
Query: 653 DSLGVGSYG*TNTNSWKGNPSYVPLGSISLEGIVSEELNMSVGIFPW 513
D +G G+YG N +V + +SLE I E+LN+ + F W
Sbjct: 24 DEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIPQEDLNIIMSTFMW 70
>02_05_0008 +
24934917-24935229,24936387-24936608,24936876-24937591,
24937646-24937728,24938448-24938514,24938833-24939228,
24939276-24939318,24939380-24939474,24940287-24940314,
24940636-24940754
Length = 693
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = -3
Query: 197 EVDSVEGIEVEMVKECDHFVDFDVGNFQTNEVKSFLCVWYLVLFKF 60
E+ ++ EV ++K C F F + Q + +LC+ ++VL +
Sbjct: 409 ELSRLDNPEVSLIKACLVFTTFSMALVQKCRLTQYLCLVFIVLVDY 454
>11_05_0063 -
18756289-18756390,18756769-18756954,18757053-18757223,
18757339-18757383,18758087-18758260,18758801-18758887,
18759349-18759510,18759945-18760015,18760296-18760435,
18760828-18760952,18761329-18761463,18762069-18762314,
18762530-18762755,18763039-18763091
Length = 640
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 613 FVFVYPYEPTPKESEPFKSVVPDNKPFGYPFDR 711
F +PYEPTP +++ F V D P DR
Sbjct: 79 FTAEFPYEPTPDQNQAFIDVDKDLTERETPMDR 111
>09_06_0134 +
21065104-21065965,21066732-21066961,21067618-21067841,
21067929-21068781
Length = 722
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = -2
Query: 630 RIDEYKQLEGESIVCTLRQHQPRRHSVRGVEHVSRNLSLVQSL 502
+I YK+ E + I L +H+P + + + +EH+S ++ L
Sbjct: 598 KISAYKRAENKVIETKLLEHRPEQDAKQRMEHLSEKKEMLNVL 640
>04_03_0658 +
18447986-18448117,18448204-18448317,18448388-18448507,
18448589-18449215,18449289-18449462,18449545-18449809,
18449889-18449959,18450043-18450145,18450221-18450280,
18450533-18450744,18450830-18450901,18451446-18451502,
18451598-18451882,18452359-18452371,18452396-18452463,
18452649-18452747,18452836-18452967,18453038-18453141,
18453234-18453423,18453519-18453524
Length = 967
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +3
Query: 411 KRLTLASLR*RVHLLTLHSSKKTLYRWPKSTSSGPRKDSY 530
K L L HLL LHS+K L + P T+ G + S+
Sbjct: 771 KLLILMEFTANSHLLVLHSNKNDLMKHPSKTNFGMVQKSF 810
>09_03_0177 -
13120816-13120941,13121032-13121137,13121231-13121305,
13121385-13121461,13122462-13122549,13122638-13122699,
13122807-13122863,13122960-13123049,13123186-13123251,
13123530-13123619,13123711-13123804,13123915-13124213
Length = 409
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 18 AFYQLYKRIVQYIIEFKQYQVPYTQEALHFVGLKI 122
A+ K ++ EF+ ++ P+ EA+H V L+I
Sbjct: 91 AYSSFEKAANAFLQEFRNWETPWAMEAMHTVALEI 125
>03_05_0787 +
27696347-27696708,27696851-27696857,27697066-27697371,
27697454-27697873
Length = 364
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 124 PTSKSTKWSHSLTISTSMPS-TLSTSVKKNSRALLTVTRSV 243
P+S TK SHS+ ++SM S T S S K S A+ V + +
Sbjct: 294 PSSIGTKRSHSMRSTSSMRSTTTSLSKKLKSPAVCVVVKEI 334
>03_01_0510 +
3841630-3844089,3844235-3844358,3844641-3844786,
3844861-3844958,3845313-3845502
Length = 1005
Score = 27.9 bits (59), Expect = 8.9
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -3
Query: 677 GTTDLNGSDSLGVGSYG*TNTNSWKGNPSYVPLG-SISLEGIVSEELNMSV 528
G TD+ G D G+ +G + +K S PLG ++ V+ LN+SV
Sbjct: 55 GDTDVRGMDLNGIVKFGRHSVEVYKDEASKPPLGQGLNKPAEVTLMLNLSV 105
>01_03_0216 +
13870364-13870472,13871406-13871477,13871603-13871668,
13871767-13871823,13871917-13871984,13872068-13872149,
13872445-13872500,13872645-13872947,13873042-13873128,
13873199-13873373,13873481-13873602,13873689-13873852,
13873925-13874179,13874312-13874433,13874542-13874663,
13875111-13875259,13875346-13875484,13875715-13875750
Length = 727
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 81 PYTQEALHFVGLKISDVKVDKMVTFF 158
PYTQ AL FV L + K+D+ T F
Sbjct: 506 PYTQSALLFVDLGMDVYKIDRACTKF 531
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,669,741
Number of Sequences: 37544
Number of extensions: 372791
Number of successful extensions: 1096
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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