Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00792
(739 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31) 33 0.32
SB_10754| Best HMM Match : C2 (HMM E-Value=5.1e-40) 30 1.7
SB_13178| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_14693| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_9298| Best HMM Match : rve (HMM E-Value=4.8e-35) 29 5.2
SB_8632| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_23022| Best HMM Match : CUB (HMM E-Value=0) 28 9.1
SB_54824| Best HMM Match : Aconitase (HMM E-Value=0.00029) 28 9.1
SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
>SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)
Length = 690
Score = 32.7 bits (71), Expect = 0.32
Identities = 20/65 (30%), Positives = 35/65 (53%)
Frame = +2
Query: 305 NAVVKMFLGPKYDENGFPFSLEDNWMNFYELDWFVQKVNPGQSQITRSSTDFAFFKEDSL 484
N V ++ PK ++ P S+ D WM+ +E FV+K+N Q+ + SS F K+ +
Sbjct: 248 NESVLVWRAPKSSQDALPVSITDRWMSQHE---FVEKLNM-QAVLCASSHTDEFVKDFLI 303
Query: 485 PMAEI 499
+ +I
Sbjct: 304 TLEKI 308
>SB_10754| Best HMM Match : C2 (HMM E-Value=5.1e-40)
Length = 2057
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +3
Query: 90 QEALHFVGLKISDVKVDKMVTFFDHFDFDAFNTVYFSKEELKSSPHGYKVRQPR 251
QE F+ +K+SD ++ FDFD+ + V +KE K S ++PR
Sbjct: 640 QENEEFLDIKVSDESLETPQFQVTRFDFDSNSEVEKNKESSKRSLREKAAKRPR 693
>SB_13178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 191
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +1
Query: 544 SSDTMPSRLMLPKGTYDGFPFQLFV--FVYPYEPTPKESEPFKSVVPDNKPFGYPFDRPV 717
+++T P+ +++P GT ++ + PY P P + P S GYP P
Sbjct: 93 NTETSPNAVIIPPGTDPQLANLVYPPPSMAPYPPGPNQGTPPPSTQQQPGSGGYPMMYPQ 152
Query: 718 LPQYF 732
P Y+
Sbjct: 153 QPGYY 157
>SB_14693| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +1
Query: 559 PSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYP 702
PS ++ P+ Y G+PFQ YP P P F + P + P YP
Sbjct: 169 PSPVLSPQ-VYRGYPFQ-----YPGTPPPPMYPAFPPIFPSSPPPEYP 210
>SB_9298| Best HMM Match : rve (HMM E-Value=4.8e-35)
Length = 1514
Score = 28.7 bits (61), Expect = 5.2
Identities = 24/110 (21%), Positives = 48/110 (43%), Gaps = 8/110 (7%)
Frame = +3
Query: 39 RIVQYIIEFKQYQVPYTQEALHFVGLKISDVKVDKMVTFFDHFDFDAFN------TVYFS 200
R++Q + + + LHF+ +IS++ + FD D D++ YF
Sbjct: 302 RLIQAVAQCILGNTRFFSNTLHFLATRISEMATYGKIDEFDR-DSDSWEQYIERLNFYFE 360
Query: 201 KEELKSSPHGYKVRQPRLTTS--RSL*QSILNLMLPLTPSSRCSLDLNTM 344
+ +S K+R+ L +S + + + +L+ P P + DL T+
Sbjct: 361 ANGVTTSDDDLKIRRAILLSSVGKKTYKLMSDLLAPAKPGEKSYADLCTL 410
>SB_8632| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1296
Score = 28.3 bits (60), Expect = 6.9
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +1
Query: 4 RPGTQPSTSSIKELFNTSSNLNSTRYHTHKKLFTSLV*KFPTSKSTKWSHSLTISTSMPS 183
R Q ST+ + ++S +T+ T T T+ TK ISTS+ +
Sbjct: 563 RTDVQTSTAVVSLTTTSTSTYATTKIATSTATLTETSTGVTTNTYTKTDTLTAISTSITT 622
Query: 184 TLSTSVK-KNSRALLTVTRS 240
++TS+ S LLT T++
Sbjct: 623 LVTTSIHLATSTQLLTSTKT 642
>SB_23022| Best HMM Match : CUB (HMM E-Value=0)
Length = 1307
Score = 27.9 bits (59), Expect = 9.1
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +1
Query: 70 STRYHTHKKLFTSLV*KFPTSKSTKWSHSLTISTS-MPSTLSTSVKKNSRAL 222
S+ YH FTS + + ++++TK S S TIS+S PS L +S + S A+
Sbjct: 842 SSSYHIGASDFTSTMIRSQSARATK-SESYTISSSHEPSLLMSSQAEVSTAM 892
>SB_54824| Best HMM Match : Aconitase (HMM E-Value=0.00029)
Length = 266
Score = 27.9 bits (59), Expect = 9.1
Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Frame = +2
Query: 239 PSTTSYHKPFTVTIDIKSDVATNAVVKMFLGPKYDENGFPFSLEDNWMNFYELDWFV-QK 415
P +Y TV DI+ DV LG D+NG P +L+D W + E+D V
Sbjct: 170 PLVVAYAIAGTVRFDIEQDV---------LGT--DKNGNPITLKDLWPSDEEIDAIVAAS 218
Query: 416 VNPGQ-SQITRSSTDFAFFKEDSLPM 490
V P Q QI D +E P+
Sbjct: 219 VKPEQFKQIYIPMFDLGTIEEAESPL 244
>SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1050
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +1
Query: 124 PTSKSTKWSHSLTISTSMPSTLSTSVKKNSRALLTVTRSV 243
P+S+ T S +L T LSTS+ + L TV RSV
Sbjct: 848 PSSRGTNNSFALLNRTEAALALSTSILATANKLHTVNRSV 887
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,981,656
Number of Sequences: 59808
Number of extensions: 446221
Number of successful extensions: 1323
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1314
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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