Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00792
         (739 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13530.1 68416.m01701 MAP3K epsilon protein kinase identical ...    31   1.1  
At5g49060.1 68418.m06070 DNAJ heat shock N-terminal domain-conta...    30   1.4  
At4g29700.1 68417.m04230 type I phosphodiesterase/nucleotide pyr...    30   1.4  
At5g45190.1 68418.m05547 cyclin family protein similar to cyclin...    29   3.2  
At1g10760.1 68414.m01231 starch excess protein (SEX1) identical ...    29   3.2  
At5g59510.1 68418.m07458 expressed protein                             29   4.3  
At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless...    28   7.4  
At3g07980.1 68416.m00975 protein kinase, putative similar to MAP...    28   7.4  
At3g07400.1 68416.m00882 lipase class 3 family protein contains ...    27   9.8  
At1g74800.1 68414.m08666 galactosyltransferase family protein co...    27   9.8  

>At3g13530.1 68416.m01701 MAP3K epsilon protein kinase identical to
           MAP3K epsilon protein kinase [Arabidopsis thaliana]
           gi|3549652|emb|CAA12272
          Length = 1368

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -3

Query: 653 DSLGVGSYG*TNTNSWKGNPSYVPLGSISLEGIVSEELN 537
           D +G G+YG         N  +V +  +SLE IV E+LN
Sbjct: 24  DEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIVQEDLN 62


>At5g49060.1 68418.m06070 DNAJ heat shock N-terminal
           domain-containing protein low similarity to SP|Q9QYI4
           DnaJ homolog subfamily B member 12 {Mus musculus};
           contains Pfam profile PF00226: DnaJ domain
          Length = 354

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 153 FFDHFD-FDAFNTVYFSKEELKSSPHGYKVRQPR 251
           F D FD  + F TV+  + E+  + H Y+ RQPR
Sbjct: 189 FDDEFDPEEIFRTVFGQQREVFRASHAYRTRQPR 222


>At4g29700.1 68417.m04230 type I phosphodiesterase/nucleotide
           pyrophosphatase family protein similar to SP|P22413
           Ectonucleotide pyrophosphatase/phosphodiesterase 1
           (Plasma-cell membrane glycoprotein PC-1) [Includes:
           Alkaline phosphodiesterase I (EC 3.1.4.1); Nucleotide
           pyrophosphatase (EC 3.6.1.9) {Homo sapiens}; contains
           Pfam profile PF01663: Type I phosphodiesterase /
           nucleotide pyrophosphatase
          Length = 461

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +3

Query: 132 KVDKMVTFFDHFDFDAFNTVYFSKEELKSSPHGYKVRQPRLTTSRS 269
           +VD +++ FDH + +  + +    +E   S H Y    PR+TT+ S
Sbjct: 194 RVDSVLSHFDHLEDEVPDLLMLYFDEPDQSGHNYGPDDPRVTTAVS 239


>At5g45190.1 68418.m05547 cyclin family protein similar to cyclin T1
           [Equus caballus] GI:5052355; contains Pfam profile
           PF00134: Cyclin, N-terminal domain
          Length = 579

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
 Frame = +2

Query: 212 QELSSRLQGPSTTSY------HKPFTVTIDIKSDVATNAVVKMFLGPKYDENGFPFSLED 373
           Q+L  RL+ P  T        H+ F      K+D  T A V MFL  K +E   P  L+D
Sbjct: 68  QDLGMRLKVPQVTIATAIIFCHRFFFRQSHAKNDRRTIATVCMFLAGKVEET--PRPLKD 125

Query: 374 NWMNFYELDWFVQKVNPGQSQ 436
                YE+   + K +PG SQ
Sbjct: 126 VIFVSYEI---INKKDPGASQ 143


>At1g10760.1 68414.m01231 starch excess protein (SEX1) identical to
            SEX1 [Arabidopsis thaliana] GI:12044358; supporting cDNA
            gi|12044357|gb|AF312027.1|AF312027
          Length = 1399

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = -3

Query: 674  TTDLNGSDSLGVGSYG*TNTNSWKGNPSYVPLGSISLEGIVSEELNMSV 528
            T+DL G+ S  +G Y      SW G P+ V L     E ++SE+ N +V
Sbjct: 1089 TSDLVGAKSRNIG-YLKGKVPSWVGIPTSVALPFGVFEKVISEKANQAV 1136


>At5g59510.1 68418.m07458 expressed protein
          Length = 144

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = +1

Query: 13  TQPSTSSIKELFNTSSNLNSTRYHTHKKLFTSLV*KFPTSKSTKWSHSLTISTSMP-STL 189
           T+ S+SS K +F  S +   T Y + + +F       PTS  + +  S + ST  P  T 
Sbjct: 33  TKTSSSSSKPVFTRSFSTKPTSYSSSEPIFRRSFSAKPTSSKSPFL-SRSGSTKCPVDTS 91

Query: 190 STSVKKNSRAL 222
           STS    SR+L
Sbjct: 92  STSKCSISRSL 102


>At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless
           protein, putative similar to notchless [Xenopus laevis]
           GI:3687833; contains Pfam PF00400: WD domain, G-beta
           repeat (8 copies)
          Length = 473

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 477 TLYRWPKSTSSGPRKDSY*HVQLLGHYAFEAD 572
           T++ W  S S  P+K    H QL+ H  F  D
Sbjct: 340 TMFLWEPSVSKQPKKRLTGHQQLVNHVYFSPD 371


>At3g07980.1 68416.m00975 protein kinase, putative similar to MAP3K
           epsilon protein kinase [Arabidopsis thaliana]
           gi|3549652|emb|CAA12272
          Length = 1367

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 653 DSLGVGSYG*TNTNSWKGNPSYVPLGSISLEGIVSEELN 537
           D +G G+YG         N  +V +  +SLE I  E+LN
Sbjct: 24  DEIGKGAYGRVYIGLDLENGDFVAIKQVSLENIGQEDLN 62


>At3g07400.1 68416.m00882 lipase class 3 family protein contains
           Pfam profile PF01764: Lipase
          Length = 1003

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = -3

Query: 596 PSYVPLGSISLEGIVSEELNMSVGIFPWSRACRFRPSVKSLL*RMQSQ*MNA 441
           PSYVP G + L G  S E ++S G   +S+    R  +  L  R+QS  M +
Sbjct: 454 PSYVPFGELYLLGTASVE-SLSEG--EYSKLTSVRSVITELRERLQSHSMKS 502


>At1g74800.1 68414.m08666 galactosyltransferase family protein
           contains Pfam profile: PF01762 galactosyltransferase
          Length = 672

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -3

Query: 275 SQ*TACGKTWLTD-LVTVRRALEFFFTEVDSVEGIEVEMVKECDHFVD 135
           S+  A  K+W+   L+T  + +  FF  +   + + VE+ KE ++F D
Sbjct: 437 SERMAVRKSWMQHVLITSAKVVARFFVALHGRKEVNVELKKEAEYFGD 484


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,384,486
Number of Sequences: 28952
Number of extensions: 317023
Number of successful extensions: 1036
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)