Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00791
         (772 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0S0F0 Cluster: Modular domain immune-type receptor 3 s...    37   0.64 
UniRef50_Q7R9U2 Cluster: Putative uncharacterized protein PY0676...    35   1.9  
UniRef50_A7P151 Cluster: Chromosome chr19 scaffold_4, whole geno...    35   2.6  
UniRef50_A6LQ52 Cluster: Methyl-accepting chemotaxis sensory tra...    34   4.5  
UniRef50_Q466E7 Cluster: Cell surface protein; n=1; Methanosarci...    33   7.9  

>UniRef50_A0S0F0 Cluster: Modular domain immune-type receptor 3
           splice variant 1; n=1; Raja eglanteria|Rep: Modular
           domain immune-type receptor 3 splice variant 1 - Raja
           eglanteria (Clearnose skate)
          Length = 336

 Score = 36.7 bits (81), Expect = 0.64
 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +2

Query: 242 VNISFIMSISQLIW-RKNKIKRKSY-TFHNEE*NNNKDMSVLSGNY 373
           V +  ++ I    W RK K K  +Y T H EE N  +DM+VL GNY
Sbjct: 209 VTVLLLILIIAFFWYRKRKTKGSNYNTSHGEENNEIQDMAVLEGNY 254


>UniRef50_Q7R9U2 Cluster: Putative uncharacterized protein PY06768;
            n=7; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
            protein PY06768 - Plasmodium yoelii yoelii
          Length = 2083

 Score = 35.1 bits (77), Expect = 1.9
 Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
 Frame = +2

Query: 107  NTIVSTQTFQQYK*KMNNILIQLIKYTKEMN*K-HIIISIQ**PLYVNISFIMSISQLIW 283
            N+IVS   F+++    N +   LIK+  E +   HI    +  P Y N +     +    
Sbjct: 844  NSIVSYNIFRRH----NQLCFLLIKHRTENDKNIHICYDAEIIPFYKNNNISKYFNDSFT 899

Query: 284  RKNKIKRKSYTFHNEE*NNNKDMSVLSGNYTHPFML 391
              NK+K KS    + E N N +++  + NY +PF L
Sbjct: 900  NINKLKNKSKIHEHAETNENDNIN-RNENYKYPFNL 934


>UniRef50_A7P151 Cluster: Chromosome chr19 scaffold_4, whole genome
           shotgun sequence; n=7; Vitis vinifera|Rep: Chromosome
           chr19 scaffold_4, whole genome shotgun sequence - Vitis
           vinifera (Grape)
          Length = 746

 Score = 34.7 bits (76), Expect = 2.6
 Identities = 25/81 (30%), Positives = 40/81 (49%)
 Frame = +2

Query: 176 IKYTKEMN*KHIIISIQ**PLYVNISFIMSISQLIWRKNKIKRKSYTFHNEE*NNNKDMS 355
           IK + +   KH+II        V +S ++++  L  RK ++KRK Y  HN    NN+  +
Sbjct: 354 IKSSSKKKKKHVIIIFISITGIVLLSLVLTLYVLKKRKKQLKRKGYMDHNSRDENNEGQA 413

Query: 356 VLSGNYTHPFMLDRTISARSN 418
            L       F LD  ++A +N
Sbjct: 414 HLE---LPLFDLDTLLNATNN 431


>UniRef50_A6LQ52 Cluster: Methyl-accepting chemotaxis sensory
           transducer precursor; n=1; Clostridium beijerinckii
           NCIMB 8052|Rep: Methyl-accepting chemotaxis sensory
           transducer precursor - Clostridium beijerinckii NCIMB
           8052
          Length = 825

 Score = 33.9 bits (74), Expect = 4.5
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = -1

Query: 487 IIRKKVASFLRRVRDSSNGILGMIASRADC 398
           + +KKV S+   ++DSSN I+G+I S  DC
Sbjct: 147 VTKKKVISYSVPIKDSSNSIIGIITSIKDC 176


>UniRef50_Q466E7 Cluster: Cell surface protein; n=1; Methanosarcina
           barkeri str. Fusaro|Rep: Cell surface protein -
           Methanosarcina barkeri (strain Fusaro / DSM 804)
          Length = 352

 Score = 33.1 bits (72), Expect = 7.9
 Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 5/53 (9%)
 Frame = +2

Query: 308 SYTFHNEE*NNNKD---MSVLSGNYTHPFMLDRTISARSN--HPEDAITTVSH 451
           +YT   E  NN KD   + V SGN+T   ++++++S +SN  +P+D I   S+
Sbjct: 35  NYTIIQEAINNVKDGDTILVYSGNFTENVIVNKSVSIKSNSGNPDDTIIQASN 87


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 690,339,692
Number of Sequences: 1657284
Number of extensions: 13267008
Number of successful extensions: 32361
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 30256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32216
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 64615845515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)