Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00791
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch...    28   1.3  
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    26   5.2  
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    26   6.9  

>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 216

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +2

Query: 245 NISFIMSISQLIWRKNKIKRKSYTFHNEE*NNNKDMSVLSG-NYTHPFM 388
           NI  ++  +++  ++ K+K K+ TFH ++     D+S  S  N+  PF+
Sbjct: 113 NIPIVLCGNKVDVKERKVKAKAITFHRKKNLQYYDISAKSNYNFEKPFL 161


>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -2

Query: 738 ISTISGIPGFILSIHFVISRLNYYHGTGADF 646
           ++  S I  F   I F+    NYYH   ADF
Sbjct: 48  VNPSSDISEFCSLIDFISQTCNYYHDVTADF 78


>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = +1

Query: 109 YNSQHTNISTIQIENEQYT--NSIN*IYKGNELETHNYINTVVTTLCQY*LHYVNQSINL 282
           +N +   +S   +EN  Y     +N   K  + +  NY+NT  T L     H V Q +N+
Sbjct: 370 FNREALWLSNFDMENVYYKLIGILNRFRKSVQRQEENYVNTRSTILSVKIHHIVVQKLNV 429


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,973,769
Number of Sequences: 5004
Number of extensions: 59587
Number of successful extensions: 124
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)