Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00791
         (772 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0287 + 22047404-22048409,22048754-22049967                       30   2.4  
10_06_0061 + 10196105-10196156,10198110-10198406,10198753-101998...    29   3.1  
06_01_1085 - 8886868-8887556,8887629-8888574                           29   3.1  
03_02_0055 - 5295466-5295476,5295519-5296635,5296760-5296855,529...    29   3.1  
09_04_0328 + 16711336-16711731,16711818-16711956,16712533-16713116     29   5.4  
05_06_0070 + 25342965-25343882,25343968-25344618                       29   5.4  
06_03_1328 + 29361248-29361502,29361903-29362453,29362585-293626...    28   9.5  

>09_06_0287 + 22047404-22048409,22048754-22049967
          Length = 739

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -3

Query: 671 IIMGQELTFLTLSSSLWVNHTQRAARVRALNITTSSG 561
           +++G    F  L+ S+ VN T RAARV  +NIT   G
Sbjct: 68  LLLGDAAAFQVLNVSI-VNATVRAARVGGINITYGGG 103


>10_06_0061 +
           10196105-10196156,10198110-10198406,10198753-10199813,
           10199900-10200250
          Length = 586

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = -3

Query: 635 SSSLWVNHTQRAARVRALNITTSSGCYCGCLPTAVRRKCLLMPDGWLSSYNPKKGCLFFK 456
           S S W+  +   A V A+ + T  G +     T  +  C  M  G ++SY+  +G L+F+
Sbjct: 114 SLSAWLQVSAGTANVMAV-VRTPDGQFVAAGATVAKSGCWSMIKGGMTSYSSGQGQLYFE 172


>06_01_1085 - 8886868-8887556,8887629-8888574
          Length = 544

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/31 (38%), Positives = 22/31 (70%)
 Frame = -1

Query: 508 RTDGYQAIIRKKVASFLRRVRDSSNGILGMI 416
           R D ++A+  ++VASF+ R+R +S G  G++
Sbjct: 151 RVDSFRALREEEVASFVNRIRAASGGGGGVV 181


>03_02_0055 -
           5295466-5295476,5295519-5296635,5296760-5296855,
           5297097-5297263,5297345-5297519,5297521-5297699,
           5298004-5298109
          Length = 616

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/60 (28%), Positives = 31/60 (51%)
 Frame = -3

Query: 629 SLWVNHTQRAARVRALNITTSSGCYCGCLPTAVRRKCLLMPDGWLSSYNPKKGCLFFKTS 450
           S+W+  ++    +RA+ + T  G +      A +  C  M  G  +SY+  KG +FF+T+
Sbjct: 153 SVWLQLSKGEGDIRAV-LVTPDGKFNTAGMIAAKCGCWTMLKGGATSYDDGKGDIFFETN 211


>09_04_0328 + 16711336-16711731,16711818-16711956,16712533-16713116
          Length = 372

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -3

Query: 659 QELTFLTLSSSLWVNHTQRAARVRALNITTSSGCYCG 549
           +EL  L L    W  H   AAR  + + TTSSG   G
Sbjct: 8   RELQLLQLQGVSWPFHAMEAARSSSWDATTSSGSSSG 44


>05_06_0070 + 25342965-25343882,25343968-25344618
          Length = 522

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -1

Query: 508 RTDGYQAIIRKKVASFLRRVRDSSNG 431
           R D ++A+  ++VASF+ R+R +S G
Sbjct: 144 RVDSFRALREEEVASFVNRIRAASGG 169


>06_03_1328 +
           29361248-29361502,29361903-29362453,29362585-29362671,
           29362910-29362966,29363069-29363307,29364190-29364308,
           29364397-29364483,29365511-29365567
          Length = 483

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +3

Query: 312 THFIMKSKII--IRICQSCPVIIHIHLCWI 395
           T F+    I+  + +C    ++IHI LCW+
Sbjct: 171 TKFLQTQNIVHPLVVCSGATLVIHILLCWV 200


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,816,680
Number of Sequences: 37544
Number of extensions: 341104
Number of successful extensions: 776
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)