Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00791
         (772 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46602| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_12991| Best HMM Match : TP2 (HMM E-Value=1.4)                       29   3.1  
SB_1013| Best HMM Match : Peptidase_M1 (HMM E-Value=0.041)             29   4.2  
SB_30271| Best HMM Match : CM_2 (HMM E-Value=9.5)                      29   5.5  
SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_23713| Best HMM Match : Disintegrin (HMM E-Value=6.6e-05)           28   7.3  
SB_22889| Best HMM Match : Adeno_VII (HMM E-Value=2.3)                 28   7.3  
SB_54971| Best HMM Match : Ras (HMM E-Value=0)                         28   9.6  

>SB_46602| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1805

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +3

Query: 270 VN*FGEKIK*KENHTHFIMKSKIIIRICQSCPVIIHIH 383
           +N   EK++   NHT FI++ +  +  C   P++I IH
Sbjct: 487 INYTNEKLQQLFNHTMFILEQEECLPFCNHPPMVIPIH 524


>SB_12991| Best HMM Match : TP2 (HMM E-Value=1.4)
          Length = 296

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 383 MDVYNYRTRLTYPYYYFTLHYEMCMIFFLFYFF 285
           MD Y Y     Y YYY+  +Y     ++ +Y++
Sbjct: 258 MDYYYYYYYYYYYYYYYYYYYHYYYYYYYYYYY 290


>SB_1013| Best HMM Match : Peptidase_M1 (HMM E-Value=0.041)
          Length = 999

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 284  RKNKIKRKSYTFHNEE*NNNKDMSVLSGNYTHPFMLDRTI 403
            RK+K K+K +   +E+    + MS  S NY  P M D ++
Sbjct: 961  RKHKKKKKKHKHRDEK--GKRKMSTSSSNYDSPLMFDHSM 998


>SB_30271| Best HMM Match : CM_2 (HMM E-Value=9.5)
          Length = 665

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -1

Query: 751 CYTLYKYNIWNSWIYSFYTLCNFTL 677
           CY+LY+ ++W  W Y     C+  +
Sbjct: 61  CYSLYRVSLWYFWCYLILPRCSIQI 85


>SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 368 YRTRLTYPYYYFTLHYEMCMIFFLFYFF 285
           YR R  Y YYY+  +Y     ++ +Y++
Sbjct: 97  YRQRHAYYYYYYYYYYYYYYYYYYYYYY 124


>SB_23713| Best HMM Match : Disintegrin (HMM E-Value=6.6e-05)
          Length = 1154

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +1

Query: 112 NSQHTNISTIQIENEQYTNSIN*IYKGNELETHNYINTVVTTL 240
           N+  T I  ++ E+  Y NS       ++ ET+ Y+NT  TT+
Sbjct: 740 NTNRTTIHALKGEHYHYLNSNRKTIHASKGETYRYLNTNRTTI 782



 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +1

Query: 112 NSQHTNISTIQIENEQYTNSIN*IYKGNELETHNYINTVVTTL 240
           NS  T I  ++ E+ +Y N+        + ET++Y+NT  TT+
Sbjct: 614 NSNRTTIHALKGEHYRYLNASRTTIHALKGETYHYLNTNRTTI 656


>SB_22889| Best HMM Match : Adeno_VII (HMM E-Value=2.3)
          Length = 347

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -1

Query: 751 CYTLYKYNIWNSWIYSFYTLCNFTL 677
           CY+LY+ ++W  W Y     C+  +
Sbjct: 61  CYSLYRVSLWCFWCYLILPRCSIQI 85


>SB_54971| Best HMM Match : Ras (HMM E-Value=0)
          Length = 239

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +2

Query: 245 NISFIMSISQLIWRKNKIKRKSYTFHNEE*NNNKDMSVLSG-NYTHPFM 388
           NI  ++  +++  +  K+K K+ TFH ++     D+S  S  N+  PF+
Sbjct: 136 NIPIVLCGNKVDIKDRKVKAKAITFHRKKNLQYYDLSAKSNYNFEKPFL 184


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,547,676
Number of Sequences: 59808
Number of extensions: 431387
Number of successful extensions: 1076
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)