Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00791
         (772 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC017166-1|AAH17166.1|  556|Homo sapiens glypican 4 protein.           33   1.5  
AY358507-1|AAQ88871.1|  556|Homo sapiens glypican 4 protein.           33   1.5  
AY052833-1|AAL11018.1|  556|Homo sapiens glypican-4 protein.           33   1.5  
AL109623-1|CAB86664.2|  556|Homo sapiens glypican 4 protein.           33   1.5  
AL034400-1|CAI42076.1|  556|Homo sapiens glypican 4 protein.           33   1.5  
AF064826-1|AAC31899.1|  556|Homo sapiens glypican 4 protein.           33   1.5  
AF030195-1|AAF22364.1|  552|Homo sapiens K-glypican precursor pr...    33   1.5  
AF030186-1|AAC69991.1|  556|Homo sapiens glypican-4 protein.           33   1.5  
U58837-1|AAB63387.1| 1251|Homo sapiens cGMP-gated cation channel...    30   8.0  
L15297-1|AAA65619.1|  623|Homo sapiens cyclic nucleotide-gated c...    30   8.0  
L15296-1|AAA65620.1|  909|Homo sapiens cyclic nucleotide-gated c...    30   8.0  
AF042498-1|AAC04830.1| 1245|Homo sapiens rod photoreceptor CNG-c...    30   8.0  

>BC017166-1|AAH17166.1|  556|Homo sapiens glypican 4 protein.
          Length = 556

 Score = 32.7 bits (71), Expect = 1.5
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -2

Query: 708 ILSIHFVISRL-NYYHGTGADFLNIKQQSMGESYSTGCQ 595
           I+++  + S++ N Y+G   DF +I  +S GE   +GC+
Sbjct: 465 IMALRVMTSKMKNAYNGNDVDFFDISDESSGEGSGSGCE 503


>AY358507-1|AAQ88871.1|  556|Homo sapiens glypican 4 protein.
          Length = 556

 Score = 32.7 bits (71), Expect = 1.5
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -2

Query: 708 ILSIHFVISRL-NYYHGTGADFLNIKQQSMGESYSTGCQ 595
           I+++  + S++ N Y+G   DF +I  +S GE   +GC+
Sbjct: 465 IMALRVMTSKMKNAYNGNDVDFFDISDESSGEGSGSGCE 503


>AY052833-1|AAL11018.1|  556|Homo sapiens glypican-4 protein.
          Length = 556

 Score = 32.7 bits (71), Expect = 1.5
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -2

Query: 708 ILSIHFVISRL-NYYHGTGADFLNIKQQSMGESYSTGCQ 595
           I+++  + S++ N Y+G   DF +I  +S GE   +GC+
Sbjct: 465 IMALRVMTSKMKNAYNGNDVDFFDISDESSGEGSGSGCE 503


>AL109623-1|CAB86664.2|  556|Homo sapiens glypican 4 protein.
          Length = 556

 Score = 32.7 bits (71), Expect = 1.5
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -2

Query: 708 ILSIHFVISRL-NYYHGTGADFLNIKQQSMGESYSTGCQ 595
           I+++  + S++ N Y+G   DF +I  +S GE   +GC+
Sbjct: 465 IMALRVMTSKMKNAYNGNDVDFFDISDESSGEGSGSGCE 503


>AL034400-1|CAI42076.1|  556|Homo sapiens glypican 4 protein.
          Length = 556

 Score = 32.7 bits (71), Expect = 1.5
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -2

Query: 708 ILSIHFVISRL-NYYHGTGADFLNIKQQSMGESYSTGCQ 595
           I+++  + S++ N Y+G   DF +I  +S GE   +GC+
Sbjct: 465 IMALRVMTSKMKNAYNGNDVDFFDISDESSGEGSGSGCE 503


>AF064826-1|AAC31899.1|  556|Homo sapiens glypican 4 protein.
          Length = 556

 Score = 32.7 bits (71), Expect = 1.5
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -2

Query: 708 ILSIHFVISRL-NYYHGTGADFLNIKQQSMGESYSTGCQ 595
           I+++  + S++ N Y+G   DF +I  +S GE   +GC+
Sbjct: 465 IMALRVMTSKMKNAYNGNDVDFFDISDESSGEGSGSGCE 503


>AF030195-1|AAF22364.1|  552|Homo sapiens K-glypican precursor
           protein.
          Length = 552

 Score = 32.7 bits (71), Expect = 1.5
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -2

Query: 708 ILSIHFVISRL-NYYHGTGADFLNIKQQSMGESYSTGCQ 595
           I+++  + S++ N Y+G   DF +I  +S GE   +GC+
Sbjct: 461 IMALRVMTSKMKNAYNGNDVDFFDISDESSGEGSGSGCE 499


>AF030186-1|AAC69991.1|  556|Homo sapiens glypican-4 protein.
          Length = 556

 Score = 32.7 bits (71), Expect = 1.5
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -2

Query: 708 ILSIHFVISRL-NYYHGTGADFLNIKQQSMGESYSTGCQ 595
           I+++  + S++ N Y+G   DF +I  +S GE   +GC+
Sbjct: 465 IMALRVMTSKMKNAYNGNDVDFFDISDESSGEGSGSGCE 503


>U58837-1|AAB63387.1| 1251|Homo sapiens cGMP-gated cation channel beta
            subunit protein.
          Length = 1251

 Score = 30.3 bits (65), Expect = 8.0
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 7/72 (9%)
 Frame = -2

Query: 753  FATHCISTISGIPGFILSIHFVISRLNYYHGTGADFLNIKQQ-------SMGESYSTGCQ 595
            FA   + TI G+P        V   LNY+ G  A  + I Q        + G++Y   C 
Sbjct: 838  FAVKTLITIGGLPDPKTLFEIVFQLLNYFTGVFAFSVMIGQMRDVVGAATAGQTYYRSCM 897

Query: 594  GPRAQYNNIFRV 559
                +Y N +++
Sbjct: 898  DSTVKYMNFYKI 909


>L15297-1|AAA65619.1|  623|Homo sapiens cyclic nucleotide-gated
           cation channel protein.
          Length = 623

 Score = 30.3 bits (65), Expect = 8.0
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 7/72 (9%)
 Frame = -2

Query: 753 FATHCISTISGIPGFILSIHFVISRLNYYHGTGADFLNIKQQ-------SMGESYSTGCQ 595
           FA   + TI G+P        V   LNY+ G  A  + I Q        + G++Y   C 
Sbjct: 210 FAVKTLITIGGLPDPKTLFEIVFQLLNYFTGVFAFSVMIGQMRDVVGAATAGQTYYRSCM 269

Query: 594 GPRAQYNNIFRV 559
               +Y N +++
Sbjct: 270 DSTVKYMNFYKI 281


>L15296-1|AAA65620.1|  909|Homo sapiens cyclic nucleotide-gated
           cation channel protein.
          Length = 909

 Score = 30.3 bits (65), Expect = 8.0
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 7/72 (9%)
 Frame = -2

Query: 753 FATHCISTISGIPGFILSIHFVISRLNYYHGTGADFLNIKQQ-------SMGESYSTGCQ 595
           FA   + TI G+P        V   LNY+ G  A  + I Q        + G++Y   C 
Sbjct: 496 FAVKTLITIGGLPDPKTLFEIVFQLLNYFTGVFAFSVMIGQMRDVVGAATAGQTYYRSCM 555

Query: 594 GPRAQYNNIFRV 559
               +Y N +++
Sbjct: 556 DSTVKYMNFYKI 567


>AF042498-1|AAC04830.1| 1245|Homo sapiens rod photoreceptor
            CNG-channel beta subunit protein.
          Length = 1245

 Score = 30.3 bits (65), Expect = 8.0
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 7/72 (9%)
 Frame = -2

Query: 753  FATHCISTISGIPGFILSIHFVISRLNYYHGTGADFLNIKQQ-------SMGESYSTGCQ 595
            FA   + TI G+P        V   LNY+ G  A  + I Q        + G++Y   C 
Sbjct: 832  FAVKTLITIGGLPDPKTLFEIVFQLLNYFTGVFAFSVMIGQMRDVVGAATAGQTYYRSCM 891

Query: 594  GPRAQYNNIFRV 559
                +Y N +++
Sbjct: 892  DSTVKYMNFYKI 903


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,452,792
Number of Sequences: 237096
Number of extensions: 2090283
Number of successful extensions: 6961
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6961
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9311505506
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)