Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00791
         (772 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48334-6|CAA88313.1|  655|Caenorhabditis elegans Hypothetical pr...    30   2.1  
AF314467-1|AAG41979.1|  655|Caenorhabditis elegans APC6 protein.       30   2.1  
AF078786-2|AAC26941.1|  889|Caenorhabditis elegans Hypothetical ...    29   2.8  
Z83316-9|CAN99655.1|  250|Caenorhabditis elegans Hypothetical pr...    29   4.8  
Z83316-6|CAD30429.2|  491|Caenorhabditis elegans Hypothetical pr...    29   4.8  
Z83316-5|CAD30428.2|  345|Caenorhabditis elegans Hypothetical pr...    29   4.8  

>Z48334-6|CAA88313.1|  655|Caenorhabditis elegans Hypothetical
           protein F10B5.6 protein.
          Length = 655

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
 Frame = +1

Query: 409 EKQSSRGCHYYCLSLVLKKRQPFF--GL*LDSHPSGISKHLRRTAVGRQPQ----*HPED 570
           E + S  C+Y    LV K  +PF    L   +H   +SK     AV R P      H E 
Sbjct: 391 EHEQSMSCYYRASKLVDKSSEPFLYTSLQYSTHSQKLSKKFMGEAVARAPNDPLIRHEEA 450

Query: 571 VVILSARTLA 600
            V  +A++ A
Sbjct: 451 CVAYTAKSYA 460


>AF314467-1|AAG41979.1|  655|Caenorhabditis elegans APC6 protein.
          Length = 655

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
 Frame = +1

Query: 409 EKQSSRGCHYYCLSLVLKKRQPFF--GL*LDSHPSGISKHLRRTAVGRQPQ----*HPED 570
           E + S  C+Y    LV K  +PF    L   +H   +SK     AV R P      H E 
Sbjct: 391 EHEQSMSCYYRASKLVDKSSEPFLYTSLQYSTHSQKLSKKFMGEAVARAPNDPLIRHEEA 450

Query: 571 VVILSARTLA 600
            V  +A++ A
Sbjct: 451 CVAYTAKSYA 460


>AF078786-2|AAC26941.1|  889|Caenorhabditis elegans Hypothetical
           protein M01G5.1 protein.
          Length = 889

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/59 (25%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
 Frame = +2

Query: 233 PLYVNISFIMSISQLIWRKNKIKRK--SYTFHNEE*NNNKDMSV----LSGNYTHPFML 391
           PL  N+    + +++ W K+++KRK   Y+   E+   N+ + +    +S ++T+P M+
Sbjct: 771 PLANNLPTKQNFNKIQWHKSQVKRKYEQYSAEREDEKRNRTLDLDDPNISADFTNPAMI 829


>Z83316-9|CAN99655.1|  250|Caenorhabditis elegans Hypothetical
           protein B0379.4c protein.
          Length = 250

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/50 (28%), Positives = 28/50 (56%)
 Frame = +2

Query: 287 KNKIKRKSYTFHNEE*NNNKDMSVLSGNYTHPFMLDRTISARSNHPEDAI 436
           + ++ R++  FH    N  KD+S L  N     ++D + ++ + HPE+A+
Sbjct: 153 RGRLFREACVFHKG--NYVKDLSRLGRNLNQTLIIDNSPASYAFHPENAV 200


>Z83316-6|CAD30429.2|  491|Caenorhabditis elegans Hypothetical
           protein B0379.4b protein.
          Length = 491

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/50 (28%), Positives = 28/50 (56%)
 Frame = +2

Query: 287 KNKIKRKSYTFHNEE*NNNKDMSVLSGNYTHPFMLDRTISARSNHPEDAI 436
           + ++ R++  FH    N  KD+S L  N     ++D + ++ + HPE+A+
Sbjct: 394 RGRLFREACVFHKG--NYVKDLSRLGRNLNQTLIIDNSPASYAFHPENAV 441


>Z83316-5|CAD30428.2|  345|Caenorhabditis elegans Hypothetical
           protein B0379.4a protein.
          Length = 345

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/50 (28%), Positives = 28/50 (56%)
 Frame = +2

Query: 287 KNKIKRKSYTFHNEE*NNNKDMSVLSGNYTHPFMLDRTISARSNHPEDAI 436
           + ++ R++  FH    N  KD+S L  N     ++D + ++ + HPE+A+
Sbjct: 248 RGRLFREACVFHKG--NYVKDLSRLGRNLNQTLIIDNSPASYAFHPENAV 295


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,319,103
Number of Sequences: 27780
Number of extensions: 330911
Number of successful extensions: 729
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)