Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00791
         (772 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    26   0.45 
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    24   1.4  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    23   2.4  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    23   2.4  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    23   2.4  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   7.3  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   9.6  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   9.6  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 25.8 bits (54), Expect = 0.45
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -3

Query: 629 SLWVNHTQRAARVRALNITT 570
           S W+NH   +ARV AL ITT
Sbjct: 262 SFWINHEATSARV-ALGITT 280


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 356 LTYPYYYFTLHYEMCMIFFLFYFFSKL 276
           L YP    +LHY + +++ LF F + L
Sbjct: 38  LVYPEPNPSLHYLLALLYILFTFLALL 64


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = -1

Query: 502 DGYQAIIRKKVASFLRRVRDSSNGILGMI 416
           DG+   ++  +++ +++VR+   GIL  I
Sbjct: 82  DGWYQTLQSAISAHMKKVREQMAGILSRI 110


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = -1

Query: 502 DGYQAIIRKKVASFLRRVRDSSNGILGMI 416
           DG+   ++  +++ +++VR+   GIL  I
Sbjct: 82  DGWYQTLQSAISAHMKKVREQMAGILSRI 110


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = -1

Query: 502 DGYQAIIRKKVASFLRRVRDSSNGILGMI 416
           DG+   ++  +++ +++VR+   GIL  I
Sbjct: 82  DGWYQTLQSAISAHMKKVREQMAGILSRI 110


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -2

Query: 258 MKLILT*SGYYCIDIIMCF*FISFVYLIN*ISILFIFYLYC*NVCVLT 115
           M L+   SG +    IMC  ++SF  L    SIL +  +     C +T
Sbjct: 97  MALLYEISGNWSFGTIMCDLWVSFDVLSCTASILNLCMISVDRFCAIT 144


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 300 KENHTHFIMKSKIIIRICQSCPVIIHIHL 386
           KE H H I+   + IRI  +  V+  I +
Sbjct: 126 KEGHFHNIIMPNVYIRIFPNGSVLYSIRI 154


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 300 KENHTHFIMKSKIIIRICQSCPVIIHIHL 386
           KE H H I+   + IRI  +  V+  I +
Sbjct: 126 KEGHFHNIIMPNVYIRIFPNGSVLYSIRI 154


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,556
Number of Sequences: 438
Number of extensions: 4284
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)