Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00790
         (759 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    29   0.95 
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    28   1.3  
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch...    27   2.9  
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac...    27   3.8  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    27   3.8  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    27   3.8  
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    26   6.7  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   8.9  

>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 12/52 (23%), Positives = 26/52 (50%)
 Frame = +2

Query: 311 LKQKQPEDSQTPIVEPTKTTSTNESREEMEFTTKNNVRDADVSLETAQKFNE 466
           +K+KQPE+  + + +  K+     + E +E  T + + DA +  +     +E
Sbjct: 260 IKEKQPEEEVSVVGDELKSFDKENNDEHLERVTNDKIADASMLQKAENNVSE 311


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 23/83 (27%), Positives = 36/83 (43%)
 Frame = +2

Query: 248 PRLNPEGNWIYEKDVLKITFPLKQKQPEDSQTPIVEPTKTTSTNESREEMEFTTKNNVRD 427
           P+ N E +    +D L     + QK     ++P V P    ST  +   +     ++V  
Sbjct: 132 PKENSELDLSNFQDDLDFENSISQKNEFSQKSPSV-PLSPVSTFPA-SSISLDASSDVSA 189

Query: 428 ADVSLETAQKFNEIANAVETTTH 496
           ADVS+  +    EI +  ET TH
Sbjct: 190 ADVSVGGSSTIKEIGSIEETFTH 212


>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
           subfamily|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 887

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
 Frame = +2

Query: 314 KQKQPEDSQTPIVEPTKTTS---TNESREEMEFTTKNNVRDADVSLETAQKFNEI 469
           ++KQP DS   I EP+++ S    N+   +  F T N +     S   A   + +
Sbjct: 772 EKKQPIDSDVEISEPSRSASIMVANKDLNDRSFETVNRIVSTRASTTNASFMSSV 826


>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
           CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 797

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 202 RLPVILIIT*KYRTFPAIESRRQLD 276
           R P +  +  KY+ FP IE RR++D
Sbjct: 471 RDPAVQALHTKYKMFPYIEKRRRID 495


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
            3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1385

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 19/83 (22%), Positives = 34/83 (40%)
 Frame = +2

Query: 269  NWIYEKDVLKITFPLKQKQPEDSQTPIVEPTKTTSTNESREEMEFTTKNNVRDADVSLET 448
            N++ E+  L    PLKQ      +TPIV  T    T++ +   +++       +D   E 
Sbjct: 1284 NFMLERSPLATPKPLKQPDFNIYETPIVRST-AHETDDEQTPSKYSDNRVESSSDTVFEN 1342

Query: 449  AQKFNEIANAVETTTHAVNFETM 517
                 +    +   TH V  +T+
Sbjct: 1343 TDLKYDNNVQMSKVTHHVRHDTI 1365


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
 Frame = +2

Query: 245 SPRLNPEGNWIYEKD--VLKITFPLKQKQPEDSQTPIVEPTKTTSTNESREEMEFTTKNN 418
           S R +P G+ +   D    KIT   KQ  P DS       T T +  E   E E    NN
Sbjct: 32  STRASPNGSDLLNDDSEAAKITTNEKQSSPVDSHNESPNDT-TINKGEDGNENEVDNVNN 90

Query: 419 VRDADVSLETAQKFNEIANAVE 484
             D     +  ++  E A+A E
Sbjct: 91  -NDKKEDEDNVEENEEEADANE 111


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +2

Query: 314 KQKQPEDSQTPIVEPTKTTSTNESREEMEFTTKNNVRDADVSLETAQK 457
           K + P  S      PT ++STN + E    + K N +DA ++ +  Q+
Sbjct: 414 KSRSPPQSLPSTPFPTSSSSTNGTLEPNANSPKKNEQDAWIAKKRRQQ 461


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
 Frame = +2

Query: 335 SQTPIVEPTKTTSTNESREEMEFTTKNNVRDADVSLETAQKFNE--IANAVETTTHAVNF 508
           S TP+     TTST+ S     + T + +  + VS       N     +A  T   +VN 
Sbjct: 387 SSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSANSTTATSASSTPLSSVNS 446

Query: 509 ETMCSS 526
            T  S+
Sbjct: 447 TTATSA 452


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,856,337
Number of Sequences: 5004
Number of extensions: 53881
Number of successful extensions: 173
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)