Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00790
(759 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0162 + 1138420-1138640,1138788-1138830,1139449-1140971,114... 33 0.33
05_05_0018 - 21547649-21547875,21547973-21548187,21548831-215490... 31 0.75
01_06_1530 - 38019997-38020011,38020705-38020867,38021126-380212... 31 1.3
02_01_0760 - 5639315-5639685,5640072-5640360 29 3.0
01_03_0280 - 14546334-14546815,14546894-14547560,14550333-145517... 29 5.3
09_04_0481 + 17967458-17967697 28 9.3
06_03_1072 + 27365834-27365945,27366360-27366464,27366844-273669... 28 9.3
06_03_0733 + 23976835-23976906,23977076-23977279,23977388-239776... 28 9.3
>07_01_0162 +
1138420-1138640,1138788-1138830,1139449-1140971,
1141770-1142063,1142145-1142337,1142624-1142694,
1142781-1144200
Length = 1254
Score = 32.7 bits (71), Expect = 0.33
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = -2
Query: 251 AGKVLYFQVMIKITGSLHHQHSILRFHVDVFLIVTRQGYSYPVLVAFPATFVFRA 87
A + +F++MI +T L H H R + V+ + Q Y + LV+ + V+ A
Sbjct: 732 ASETQFFKIMINMT--LKHYHEFSRKRIAVYAVHNLQSYQFKALVSVSTSLVWAA 784
>05_05_0018 -
21547649-21547875,21547973-21548187,21548831-21549096,
21549534-21549657,21549946-21550041,21550179-21550294,
21550374-21550455,21550574-21550728,21550819-21551001,
21551114-21551305,21551389-21551564,21551676-21551729,
21552076-21552147,21552255-21552582
Length = 761
Score = 31.5 bits (68), Expect = 0.75
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +2
Query: 338 QTPIVEPTKTTSTNESREEME--FTTKNNVRDADVSLETAQKFNEIANAVETTT 493
Q ++EP K TS NE++ F K +R + A+ NEI ++V+ T
Sbjct: 465 QYSVIEPVKHTSENETQSSTSNMFCLKRRLRIRTLQYRPAKNINEIYDSVDPET 518
>01_06_1530 -
38019997-38020011,38020705-38020867,38021126-38021211,
38021297-38022642,38022980-38023193
Length = 607
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +2
Query: 314 KQKQPEDSQTPIVEPTK-TTSTNESREEMEFTTKNNVRDADVS 439
K K+P D QT + EPT+ S++E +E EF +++ + D S
Sbjct: 390 KMKEPVDQQTQLKEPTEGKESSHEPLDEDEFELEDDKLNGDSS 432
>02_01_0760 - 5639315-5639685,5640072-5640360
Length = 219
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 105 RXEGDKYRVTIPLPGYDQKDINVKAKDGVLMV 200
R + ++YR+ +PG + D+ V DGVL +
Sbjct: 118 REDEERYRLRFEVPGLGKDDVRVYVDDGVLAI 149
>01_03_0280 -
14546334-14546815,14546894-14547560,14550333-14551754,
14552831-14553127
Length = 955
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/64 (20%), Positives = 27/64 (42%)
Frame = +2
Query: 326 PEDSQTPIVEPTKTTSTNESREEMEFTTKNNVRDADVSLETAQKFNEIANAVETTTHAVN 505
P+ + P+ + TNES E + T + +V+ NE+ N + +
Sbjct: 50 PDAATPPLTNENENDRTNESENENDRTKTSENEGTNVNENKRTNVNELGNMADRDEEQIL 109
Query: 506 FETM 517
++T+
Sbjct: 110 YDTI 113
>09_04_0481 + 17967458-17967697
Length = 79
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -2
Query: 266 LRDSIAGKVLYFQVMIKITGSLHHQH-SILRFHVDVFLIVT 147
+ +++ G+ Q +TGS HH H S++ + L++T
Sbjct: 1 MAETLTGEARLIQTKAMLTGSCHHDHSSVIAVTIFTTLVIT 41
>06_03_1072 +
27365834-27365945,27366360-27366464,27366844-27366929,
27367445-27367631,27368031-27368142,27368235-27368337,
27368424-27368469,27368670-27368708,27368803-27368959,
27369031-27369133,27369337-27369453,27369880-27369957,
27370044-27370145,27370252-27370345,27370432-27370542,
27370643-27370707,27370949-27371097,27371349-27371581,
27371778-27371908,27372016-27372126,27372210-27372326
Length = 785
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = -1
Query: 390 SRLSFVEVVLVGSTIGVWLSSGCFCFSGKVIFNTSFS*IQLPSGFNRG 247
S + EV + S G+ L +GCFC G S L S F G
Sbjct: 370 SWFGYREVEKLASLFGIHLRTGCFCNPGACAKYLGLSHSDLVSNFEAG 417
>06_03_0733 +
23976835-23976906,23977076-23977279,23977388-23977645,
23978002-23978217,23978324-23978479,23978556-23978867,
23978957-23979044,23979224-23979372,23979465-23979755
Length = 581
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = -2
Query: 758 NSVHDICSILLQHHISRASILFFSLSLNVQVSAA*RKAADVLISK 624
+SVHD+CS+L +S ++ SLN V A + +D +SK
Sbjct: 190 SSVHDLCSVLGMDFLS--TVTEVHPSLNDSVGAEFKSISDATLSK 232
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,929,628
Number of Sequences: 37544
Number of extensions: 362615
Number of successful extensions: 950
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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