Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00790
         (759 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          24   1.8  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   4.1  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   7.2  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   7.2  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   7.2  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    21   9.5  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   9.5  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   9.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   9.5  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 326 PEDSQTPIVEPTKTTSTNESREEMEFTTKN 415
           P  + +P  EP+ TTST  S++ ++    N
Sbjct: 380 PTTTASPTTEPSTTTSTTISQKHIKVFVVN 409


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
 Frame = +2

Query: 227 LENTEP-SPRLNPEGNW 274
           L+N E  SP+LNP  NW
Sbjct: 82  LKNDESESPKLNPYPNW 98


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +2

Query: 221 SLLENTEPSPRLNPEGNWIYEK 286
           SL  N   SP+L P  NW   K
Sbjct: 98  SLDTNRGGSPKLTPYPNWAQNK 119


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
 Frame = +2

Query: 236 TEPSPRLNPEGNWIYEKDVLKITFPLKQKQPEDSQT-----PIVEPTKTT 370
           +EP+ R++P G  I         +P+    P+   T     P V P +T+
Sbjct: 373 SEPTERISPYGYPIGSGGSFPSLYPMATTSPQSQSTIQTLRPQVSPDRTS 422


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 535 DSARTAHRLEVDSVSSRFYSVRDLIELLS 449
           DS  TA R+E  S + + +  +   ELLS
Sbjct: 543 DSVNTASRMEATSQAMQIHISQSTKELLS 571


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 500 VNFETMCSSCRIHINLIKYKCEN 568
           VN   + S  + H N+ +Y+C N
Sbjct: 27  VNKSMLNSHLKSHSNVYQYRCAN 49


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +2

Query: 329 EDSQTPIVEPTKTTSTNESREEMEFTTKNNVRDADVSLE 445
           +D   P+V  +K++  N  R +  +   N  R   VSL+
Sbjct: 481 KDYSLPMVNHSKSSRINIERMKQVYQQLNKYRGNGVSLK 519


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 21  SNLGNGMQNLDNTMKTLPLKLPSSKDEGRXEG 116
           S LG+     +NT   +P+  P +KD G   G
Sbjct: 407 SILGDKKTAEENTDYFMPIGRPRAKDYGHSSG 438


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 311 LKQKQPEDSQTPIVEPTKTTS 373
           L +K P  S  P+V P K  S
Sbjct: 877 LSKKSPSPSPRPLVGPCKALS 897


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,495
Number of Sequences: 438
Number of extensions: 4058
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)