Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00790
(759 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g31900.1 68415.m03897 myosin family protein contains Pfam pro... 31 0.63
At3g03200.1 68416.m00316 no apical meristem (NAM) family protein... 31 0.83
At2g28290.2 68415.m03434 chromatin remodeling protein, putative ... 30 1.5
At2g28290.1 68415.m03433 chromatin remodeling protein, putative ... 30 1.5
At1g71220.1 68414.m08219 UDP-glucose:glycoprotein glucosyltransf... 30 1.9
At5g10230.1 68418.m01187 annexin 7 (ANN7) nearly identical to ca... 29 3.4
At1g52560.1 68414.m05933 26.5 kDa class I small heat shock prote... 28 7.7
>At2g31900.1 68415.m03897 myosin family protein contains Pfam
profiles: PF00063 myosin head (motor domain), PF01843 DIL
domain, PF00612 IQ calmodulin-binding motif, PF02736
myosin N-terminal SH3-like domain
Length = 1556
Score = 31.5 bits (68), Expect = 0.63
Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 6/104 (5%)
Frame = +2
Query: 275 IYEKDVLKITFPLKQKQPEDSQTPIVEPTKTTSTNESREEMEFTT---KNNVRDADV--- 436
I +K+ K+ ++Q P + P+V+ T+ N E+E K +++ +V
Sbjct: 944 IRDKEAAKLA--IEQAPPIIKEVPVVDNTQLELLNSQNNELEVEVAKLKGKIKEFEVKCF 1001
Query: 437 SLETAQKFNEIANAVETTTHAVNFETMCSSCRIHINLIKYKCEN 568
+LE + + + A + + AV F+ + R+H NL + EN
Sbjct: 1002 ALENDSRAS-VTEAEDAKSKAVEFQEIIE--RLHTNLSNLESEN 1042
>At3g03200.1 68416.m00316 no apical meristem (NAM) family protein
similar to NAC2 (GI:6456751) {Arabidopsis thaliana}
Length = 479
Score = 31.1 bits (67), Expect = 0.83
Identities = 34/149 (22%), Positives = 59/149 (39%), Gaps = 3/149 (2%)
Frame = +2
Query: 128 GNYTPAWLRSERHQRESEGWSADGAGY---Q*F*SLLENTEPSPRLNPEGNWIYEKDVLK 298
GNY + S RH ++ ++ + GY Q S L+NT+ P + GN D +
Sbjct: 300 GNYDEQLITSNRHMNQNYIYAFEKTGYIKEQKIRSSLDNTDEDPGFH--GN--NTNDNID 355
Query: 299 ITFPLKQKQPEDSQTPIVEPTKTTSTNESREEMEFTTKNNVRDADVSLETAQKFNEIANA 478
I L + +E + +TNE+ + F V ET + +
Sbjct: 356 IDDFLSFDIYNEDNVNQIEDNEDVNTNETLDSSGFEV--------VEEETRFNNQMLIST 407
Query: 479 VETTTHAVNFETMCSSCRIHINLIKYKCE 565
+TT + C + ++H+N I + E
Sbjct: 408 YQTTKILYHQVVPCHTLKVHVNPISHNVE 436
>At2g28290.2 68415.m03434 chromatin remodeling protein, putative (SYD)
similar to transcriptional activator HBRM [Homo sapiens]
GI:414117; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain; identical to cDNA putative chromatin
remodeling protein SYD (SPLAYED) GI:13603720
Length = 3529
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +2
Query: 233 NTEPSPRLNPEGNWIYEKDVLKITFPLKQKQPEDSQTPIVEPTKTTSTNESREEME 400
++EP +L P + + T PL +++ DSQ +EP+ + S E E +
Sbjct: 3158 SSEPQLQLPPSAEPVISEGTELATLPLTEEENADSQLANIEPSSSPSVVEKNIEAQ 3213
>At2g28290.1 68415.m03433 chromatin remodeling protein, putative (SYD)
similar to transcriptional activator HBRM [Homo sapiens]
GI:414117; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain; identical to cDNA putative chromatin
remodeling protein SYD (SPLAYED) GI:13603720
Length = 3574
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +2
Query: 233 NTEPSPRLNPEGNWIYEKDVLKITFPLKQKQPEDSQTPIVEPTKTTSTNESREEME 400
++EP +L P + + T PL +++ DSQ +EP+ + S E E +
Sbjct: 3158 SSEPQLQLPPSAEPVISEGTELATLPLTEEENADSQLANIEPSSSPSVVEKNIEAQ 3213
>At1g71220.1 68414.m08219 UDP-glucose:glycoprotein
glucosyltransferase, putative similar to
UDP-glucose:glycoprotein glucosyltransferase precursor
GB:Q09332 [SP|Q09332] from Drosophila melanogaster,
[gi:7670746] and [gi:11346464] from Homo sapiens
Length = 1673
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Frame = -3
Query: 505 VDSVSSRFYSVRDLIELLS----CLQADVSVPHVVLGGELHLF 389
VD+ SS FY V DL L+ C+ DVSV V G EL F
Sbjct: 146 VDTGSSLFYDVADLQSWLASAPACISLDVSVGDAVQGPELFDF 188
>At5g10230.1 68418.m01187 annexin 7 (ANN7) nearly identical to
calcium-binding protein annexin 7 [Arabidopsis thaliana]
GI:12667522
Length = 316
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = -3
Query: 583 LFITLILTFIFD--QINMDSARTAHRLEVDSVSSRFYSVRDLIELLS 449
L + L+ TF +D ++NM AR+ ++ + + + Y+ DLI +L+
Sbjct: 148 LLVPLVSTFRYDGDEVNMTLARSEAKILHEKIKEKAYADDDLIRILT 194
>At1g52560.1 68414.m05933 26.5 kDa class I small heat shock
protein-like (HSP26.5-P) contains Pfam profile: PF00011
Hsp20/alpha crystallin family; identified in Scharf,
K-D., et al,Cell Stress & Chaperones (2001) 6: 225-237.
Length = 232
Score = 27.9 bits (59), Expect = 7.7
Identities = 8/33 (24%), Positives = 20/33 (60%)
Frame = +3
Query: 105 RXEGDKYRVTIPLPGYDQKDINVKAKDGVLMVQ 203
+ + D Y++ +PG ++D+ + DG+L ++
Sbjct: 130 KEQDDCYKLRYEVPGLTKEDVKITVNDGILTIK 162
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,091,894
Number of Sequences: 28952
Number of extensions: 288604
Number of successful extensions: 856
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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