Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00788
         (714 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0537 - 18313265-18313291,18313352-18315460                       30   2.1  
01_01_0471 - 3467275-3467351,3467526-3467895,3468258-3468555,346...    30   2.1  
03_01_0087 - 704715-705347,705423-706349                               28   8.5  

>08_02_0537 - 18313265-18313291,18313352-18315460
          Length = 711

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 20/82 (24%), Positives = 40/82 (48%)
 Frame = +3

Query: 126 NSVKYLRWINIKTTLRVVTPKRVPNIIANLPKEKNELSATHKLYFHRVLLVLRLQKNLKS 305
           NS+ +++ +   T LRV       + +    +   +  +TH+      L  L  +KNL+S
Sbjct: 424 NSLNFVKALGELTKLRVFRVDCRYSWLNGKKQAPRQSVSTHEDVLLSSLQNLLKKKNLRS 483

Query: 306 AE*NKTQSLMYLYSILDPFCLL 371
            E + T     ++S+++P+C L
Sbjct: 484 LEIDLTNGSSLVFSLMNPYCPL 505


>01_01_0471 -
           3467275-3467351,3467526-3467895,3468258-3468555,
           3468680-3469734,3469823-3470467
          Length = 814

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 138 YLRWINIKTTLRVVTPKRVPN 200
           YLRW    T +R+ TPKR+ N
Sbjct: 610 YLRWYRRSTRIRLCTPKRISN 630


>03_01_0087 - 704715-705347,705423-706349
          Length = 519

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 342 YSILDPFCLLWKIGVRVRLVYLHLNRR 422
           Y ++DP+ +LW +   +    LHL RR
Sbjct: 8   YLLMDPWLVLWLVLASMAFALLHLRRR 34


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,486,879
Number of Sequences: 37544
Number of extensions: 297506
Number of successful extensions: 661
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)