Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00788
         (714 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24287| Best HMM Match : Homeobox (HMM E-Value=9e-28)                31   0.93 
SB_48483| Best HMM Match : SH3_1 (HMM E-Value=7.1e-23)                 30   1.6  
SB_28412| Best HMM Match : C1_1 (HMM E-Value=5.5e-17)                  30   2.1  
SB_18522| Best HMM Match : DUF960 (HMM E-Value=8.2)                    30   2.1  
SB_3780| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.1  
SB_55499| Best HMM Match : Arm (HMM E-Value=0.15)                      29   4.9  
SB_26062| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_8366| Best HMM Match : Ponericin (HMM E-Value=2.9)                  28   6.5  
SB_40689| Best HMM Match : DUF558 (HMM E-Value=1.3e-14)                28   8.6  
SB_22519| Best HMM Match : Pterin_4a (HMM E-Value=0.86)                28   8.6  

>SB_24287| Best HMM Match : Homeobox (HMM E-Value=9e-28)
          Length = 561

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +1

Query: 547 EKKFQNELLALVQNANEFSAEKYVAEKIQKANYTPIPTRWRHKRLPEF 690
           E+KFQ +    +   NE +   Y+++   K  +    T+W+ +  PEF
Sbjct: 449 EEKFQEKKYLTISERNELAKSMYLSDTQVKTWFQNRRTKWKKQMAPEF 496


>SB_48483| Best HMM Match : SH3_1 (HMM E-Value=7.1e-23)
          Length = 936

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +2

Query: 245 AQIIFSPRTVGLEITEKPQISRVKQDP--IPYVPILNPRSILPIVEDWGKGEIGLPS 409
           +QI+F+P T    +T++   S+ + +P  I + P    RS LP+   +   +I  PS
Sbjct: 474 SQILFTPHTSSFLLTDRLPSSQDRLNPSQIVFTPYCAHRSSLPLTRRFSYSQIVFPS 530


>SB_28412| Best HMM Match : C1_1 (HMM E-Value=5.5e-17)
          Length = 490

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/37 (35%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
 Frame = +3

Query: 204 IANLPKE-KNELSATHKLYFHRVLLVLRLQKNLKSAE 311
           +A++P++ KN++   ++ Y  R+ L + LQK++KSA+
Sbjct: 444 LAHMPQQIKNKVKEKYQKYKERLELAMELQKDMKSAK 480


>SB_18522| Best HMM Match : DUF960 (HMM E-Value=8.2)
          Length = 368

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = -3

Query: 238 DNSFFSFGRLAIIFGTRFGVTTLSVVLMFIHRKYFTEF*IQYYFRVYNTLFSYKSLH 68
           D+S F F     + G    + ++S+ L  IHR +  +        +Y++LF+Y SLH
Sbjct: 23  DSSEFWFDGHPYVAGATLFLWSISLTLSLIHRLHPPQCWATTRRMLYHSLFTYSSLH 79


>SB_3780| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 250

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
 Frame = -3

Query: 400 TNLTLTPIFHNRQNGSRIEYRYIRDWVLFYSADL--RFFCNLKTNSTR*KYNLCVADNSF 227
           TNL    +FH R+NG  +      +W+  +   L   FFC ++    R + NL   D   
Sbjct: 3   TNLDKMVLFHERENGCNVS---TGEWIHRFCTKLGNDFFCEIEKEYVRDQSNLVGLDEEV 59

Query: 226 FSFGR-LAII 200
             F + L++I
Sbjct: 60  SCFSQALSVI 69


>SB_55499| Best HMM Match : Arm (HMM E-Value=0.15)
          Length = 586

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 634 KANYTPIPTRWRHKRLPEFIIRQLL 708
           K+NYTP+   W  +  PE I+R L+
Sbjct: 30  KSNYTPLTREWTTRAPPENILRVLI 54


>SB_26062| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1535

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +1

Query: 526  QRRRQIKEKKFQNELLALVQNANEFSAEKYVAEKIQKANYTPIPTRWRHK 675
            ++RR+ ++KK+Q EL  L Q A + + +K   E++        P   RHK
Sbjct: 1151 RKRRRKQDKKYQRELERLNQWALQMNEKKLEHERLYSEKQKRNPKCPRHK 1200


>SB_8366| Best HMM Match : Ponericin (HMM E-Value=2.9)
          Length = 307

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = +1

Query: 511 WARVKQRRRQIKEKKFQNELLALVQ 585
           WA  K+   ++KEK++++ELL +++
Sbjct: 222 WAIAKEHGFEVKEKRYEHELLPVIE 246


>SB_40689| Best HMM Match : DUF558 (HMM E-Value=1.3e-14)
          Length = 162

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 183 PKRVPNIIANLPKEKNELSATHKLYFHRVLLVLRLQ 290
           P R+P I  +LP     +     + FH +  VLRL+
Sbjct: 17  PLRIPRIYVDLPLSTQSVQVLPDMAFHHLCKVLRLK 52


>SB_22519| Best HMM Match : Pterin_4a (HMM E-Value=0.86)
          Length = 1578

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
 Frame = +2

Query: 257 FSPRTVGLEITEKPQISRVKQD----PIPYVPILNPRSILPIVEDWGKGEIGLPS 409
           F P +   + T  P  + +  D     IP+ P+  P S  P+V DW   E+ +PS
Sbjct: 749 FPPGSTVRQATAMPLAAEIGNDGSFCSIPFQPVTIPGSP-PVVVDWPTTEVTVPS 802


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,568,996
Number of Sequences: 59808
Number of extensions: 357164
Number of successful extensions: 838
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)