Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00788
         (714 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032648-6|CAC35867.1|  244|Caenorhabditis elegans Hypothetical ...    31   0.82 
AF303259-1|AAG50217.1|  244|Caenorhabditis elegans 2O16 protein.       31   0.82 
U97407-8|AAN84851.1|  397|Caenorhabditis elegans Prion-like-(q/n...    31   1.1  
U97407-7|AAB52480.2|  457|Caenorhabditis elegans Prion-like-(q/n...    31   1.1  
U50313-4|AAA92328.1|  417|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AF106584-1|AAC78221.1|  360|Caenorhabditis elegans Hypothetical ...    31   1.1  
AF003136-4|AAK93853.2|  368|Caenorhabditis elegans Acyltransfera...    31   1.1  
AC006795-1|AAF59492.2|  435|Caenorhabditis elegans Hypothetical ...    30   1.9  
U80448-7|AAB37820.1|  260|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>AL032648-6|CAC35867.1|  244|Caenorhabditis elegans Hypothetical
           protein Y54G9A.7 protein.
          Length = 244

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +1

Query: 529 RRRQIK-EKKFQNELLALVQNANEFSAEKYVAEKIQKAN 642
           R +++K E++FQ  + +L+     F+ EKYV + I+ AN
Sbjct: 141 REKKLKSEREFQKRMKSLLTELEAFNPEKYVKDTIRMAN 179


>AF303259-1|AAG50217.1|  244|Caenorhabditis elegans 2O16 protein.
          Length = 244

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +1

Query: 529 RRRQIK-EKKFQNELLALVQNANEFSAEKYVAEKIQKAN 642
           R +++K E++FQ  + +L+     F+ EKYV + I+ AN
Sbjct: 141 REKKLKSEREFQKRMKSLLTELEAFNPEKYVKDTIRMAN 179


>U97407-8|AAN84851.1|  397|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 19,
           isoform b protein.
          Length = 397

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +1

Query: 505 ACWARVKQR-RRQIKEKKFQNELLALVQNANEFSAEK 612
           +CWA  ++R R+++   +F NEL AL  ++    AEK
Sbjct: 66  SCWANCEERFRKEVSSAQFINELKALCTSSQRQVAEK 102


>U97407-7|AAB52480.2|  457|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 19,
           isoform a protein.
          Length = 457

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +1

Query: 505 ACWARVKQR-RRQIKEKKFQNELLALVQNANEFSAEK 612
           +CWA  ++R R+++   +F NEL AL  ++    AEK
Sbjct: 74  SCWANCEERFRKEVSSAQFINELKALCTSSQRQVAEK 110


>U50313-4|AAA92328.1|  417|Caenorhabditis elegans Hypothetical
           protein F44C4.2 protein.
          Length = 417

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/36 (38%), Positives = 26/36 (72%), Gaps = 2/36 (5%)
 Frame = +3

Query: 249 KLYFHRVLLVLRLQKNLK--SAE*NKTQSLMYLYSI 350
           K+Y HR+L++++L K++K  S E +K + L +L+ I
Sbjct: 368 KMYSHRLLILMKLVKSMKRISREKSKIKELFWLFDI 403


>AF106584-1|AAC78221.1|  360|Caenorhabditis elegans Hypothetical
           protein F54A5.2 protein.
          Length = 360

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 367 RQNGSRIEYRYIRDWVLFYSADLRFFCNL 281
           R+NG  I Y +I+ W    S ++  FCNL
Sbjct: 229 RRNGKTIFYNHIKAWAFPTSNEVNIFCNL 257


>AF003136-4|AAK93853.2|  368|Caenorhabditis elegans
           Acyltransferase-like protein 11 protein.
          Length = 368

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +3

Query: 615 CCGEDSKSQLHSYTDSLETQETPRVHYTSATW 710
           CCG     QLH + D +   E P+      TW
Sbjct: 259 CCGSQQFKQLHIHLDRIPIDEVPKAKLELRTW 290


>AC006795-1|AAF59492.2|  435|Caenorhabditis elegans Hypothetical
           protein Y50D4B.7 protein.
          Length = 435

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +2

Query: 251 IIFSPRTVGLEITEKPQISRVKQDPIPYVPILNPRSILPIVEDWGK 388
           II +P   GL +        +  + I Y PI +   I+P+  DWG+
Sbjct: 33  IISAPIAYGLTVLTSNGSEPMSHENISYTPIRSRGDIIPLNPDWGE 78


>U80448-7|AAB37820.1|  260|Caenorhabditis elegans Hypothetical
           protein F59A3.7 protein.
          Length = 260

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +2

Query: 23  ILKMLK*CYIMLYNSMQTFVTKQRIINAKIILNSEFRKIFTVD 151
           ILKM+K    +++ S+  F+ KQ + N K + +  F + F VD
Sbjct: 215 ILKMMKTRKEVMFQSVPAFLNKQELYNLKKLFSINFLR-FLVD 256


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,980,971
Number of Sequences: 27780
Number of extensions: 288577
Number of successful extensions: 799
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)