Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00788
         (714 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15110.1 68417.m02322 cytochrome P450 97B3, putative (CYP97B3...    29   3.1  
At5g04040.1 68418.m00384 patatin-related contains Patatin domain...    28   5.3  
At3g57140.2 68416.m06362 patatin-related contains Patatin domain...    28   5.3  
At3g57140.1 68416.m06361 patatin-related contains Patatin domain...    28   5.3  

>At4g15110.1 68417.m02322 cytochrome P450 97B3, putative (CYP97B3)
           identical to Cytochrome P450 97B3 (SP:O23365)
           [Arabidopsis thaliana]
          Length = 580

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 19/48 (39%), Positives = 26/48 (54%)
 Frame = +1

Query: 505 ACWARVKQRRRQIKEKKFQNELLALVQNANEFSAEKYVAEKIQKANYT 648
           A W   +QR+ Q   K   + L  L+QNA E   E  V EK+Q+ +YT
Sbjct: 279 ARWIVPRQRKFQSDLKIINDCLDGLIQNAKETRQETDV-EKLQERDYT 325


>At5g04040.1 68418.m00384 patatin-related contains Patatin domain
           PF01734
          Length = 825

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
 Frame = -3

Query: 340 RYIRDWVLFYSADLRFFCNLKTNSTR*KYNLCVADNSFFSFGRLAIIF--GTRFGVTTLS 167
           R+I++++   S  LR  CN  +     +  L     +  +FGR A++   G   G   + 
Sbjct: 187 RHIKEYIDEVSTQLRMVCNSDSEELSLEEKLSFMHETRHAFGRTALLLSGGASLGAFHVG 246

Query: 166 VVLMFIHRK 140
           VV   +  K
Sbjct: 247 VVRTLVEHK 255


>At3g57140.2 68416.m06362 patatin-related contains Patatin domain
           PF01734
          Length = 801

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
 Frame = -3

Query: 340 RYIRDWVLFYSADLRFFCNLKTNSTR*KYNLCVADNSFFSFGRLAIIF--GTRFGVTTLS 167
           R I++++   S  LR  C++ T     +  L     +  ++GR A++   G   G   L 
Sbjct: 188 RLIKEYIDEVSTQLRMVCDMDTEELSLEEKLSFMHETRHAYGRTALLLSGGASLGAFHLG 247

Query: 166 VVLMFIHRK 140
           VV   +  K
Sbjct: 248 VVKTLVEHK 256


>At3g57140.1 68416.m06361 patatin-related contains Patatin domain
           PF01734
          Length = 801

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
 Frame = -3

Query: 340 RYIRDWVLFYSADLRFFCNLKTNSTR*KYNLCVADNSFFSFGRLAIIF--GTRFGVTTLS 167
           R I++++   S  LR  C++ T     +  L     +  ++GR A++   G   G   L 
Sbjct: 188 RLIKEYIDEVSTQLRMVCDMDTEELSLEEKLSFMHETRHAYGRTALLLSGGASLGAFHLG 247

Query: 166 VVLMFIHRK 140
           VV   +  K
Sbjct: 248 VVKTLVEHK 256


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,784,929
Number of Sequences: 28952
Number of extensions: 257103
Number of successful extensions: 608
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)